miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31895 3' -51.9 NC_006938.1 + 10776 0.66 0.926574
Target:  5'- uGAACcaCGGCGCGcuUGCUGACcaGGCCa -3'
miRNA:   3'- -CUUGaaGCUGCGCcuACGGUUG--CUGG- -5'
31895 3' -51.9 NC_006938.1 + 23159 0.66 0.920667
Target:  5'- aGACUg-GugGCGGAgGaaAGCGACCc -3'
miRNA:   3'- cUUGAagCugCGCCUaCggUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 16403 0.66 0.920667
Target:  5'- cGAGCUcCGAgccggagaGCGGGUGCUucGCgGGCCa -3'
miRNA:   3'- -CUUGAaGCUg-------CGCCUACGGu-UG-CUGG- -5'
31895 3' -51.9 NC_006938.1 + 55179 0.66 0.918841
Target:  5'- ----gUCGGCGCGGAuacgcggugggguuUGCCGugGucaguCCc -3'
miRNA:   3'- cuugaAGCUGCGCCU--------------ACGGUugCu----GG- -5'
31895 3' -51.9 NC_006938.1 + 57039 0.66 0.914481
Target:  5'- uGACggUGACGCGGAggguuuuauuUGCaugGACGGCUc -3'
miRNA:   3'- cUUGaaGCUGCGCCU----------ACGg--UUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 41583 0.66 0.906026
Target:  5'- gGAGCggCuGCGCGGcgGCCugggcaaaguccccGACGACg -3'
miRNA:   3'- -CUUGaaGcUGCGCCuaCGG--------------UUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 50064 0.66 0.904009
Target:  5'- -----cCGGCGCGGGUggcuccacaggucccGCCAACGcucagGCCg -3'
miRNA:   3'- cuugaaGCUGCGCCUA---------------CGGUUGC-----UGG- -5'
31895 3' -51.9 NC_006938.1 + 55558 0.66 0.90128
Target:  5'- ------gGugGCGGGaagagcagugUGCCGACGACg -3'
miRNA:   3'- cuugaagCugCGCCU----------ACGGUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 1575 0.66 0.90128
Target:  5'- -cACcUCGGCGCGGA-GCUGAUGGugucCCg -3'
miRNA:   3'- cuUGaAGCUGCGCCUaCGGUUGCU----GG- -5'
31895 3' -51.9 NC_006938.1 + 15149 0.66 0.90128
Target:  5'- gGGGCggUCGuCGCuccGGA-GCCggUGACCa -3'
miRNA:   3'- -CUUGa-AGCuGCG---CCUaCGGuuGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 30895 0.66 0.90128
Target:  5'- gGAGCUggaGACGCaGGAgGCgGACGgaGCCc -3'
miRNA:   3'- -CUUGAag-CUGCG-CCUaCGgUUGC--UGG- -5'
31895 3' -51.9 NC_006938.1 + 9515 0.66 0.90128
Target:  5'- ----gUCGAUGaacaGGGUGCCGggcuCGGCCc -3'
miRNA:   3'- cuugaAGCUGCg---CCUACGGUu---GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 48475 0.67 0.894271
Target:  5'- -cGCcUCGAuCGUGGAgacagUGCCGACGGucuCCg -3'
miRNA:   3'- cuUGaAGCU-GCGCCU-----ACGGUUGCU---GG- -5'
31895 3' -51.9 NC_006938.1 + 61522 0.67 0.886993
Target:  5'- cGAACU-CGAUGCuccGUGUCGAgGGCCg -3'
miRNA:   3'- -CUUGAaGCUGCGcc-UACGGUUgCUGG- -5'
31895 3' -51.9 NC_006938.1 + 60599 0.67 0.886993
Target:  5'- -cGCUUCGACgGUGGcaacGCCAACuucGCCa -3'
miRNA:   3'- cuUGAAGCUG-CGCCua--CGGUUGc--UGG- -5'
31895 3' -51.9 NC_006938.1 + 34256 0.67 0.879452
Target:  5'- --uCggCGAgGCGGAgGUCAACGAgCCg -3'
miRNA:   3'- cuuGaaGCUgCGCCUaCGGUUGCU-GG- -5'
31895 3' -51.9 NC_006938.1 + 55399 0.67 0.879452
Target:  5'- cAGCagUCGGCGCGcucGCCGcagGCGGCCu -3'
miRNA:   3'- cUUGa-AGCUGCGCcuaCGGU---UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 60326 0.67 0.879452
Target:  5'- gGAACUgUCaGCGCGGcgGCCcucAGCG-CCu -3'
miRNA:   3'- -CUUGA-AGcUGCGCCuaCGG---UUGCuGG- -5'
31895 3' -51.9 NC_006938.1 + 22923 0.67 0.879452
Target:  5'- -uGCUg-GACcaGCGGAUGCgGACGAUg -3'
miRNA:   3'- cuUGAagCUG--CGCCUACGgUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 8274 0.67 0.863605
Target:  5'- aGGGCUUCGAgGgagaccuccCGGugGUCGGCGACCg -3'
miRNA:   3'- -CUUGAAGCUgC---------GCCuaCGGUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.