miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31896 5' -56.2 NC_006938.1 + 48285 0.66 0.758464
Target:  5'- --uGGACCugcguguugUCGCC-CGugGGAUUGGGc -3'
miRNA:   3'- guuCCUGG---------AGUGGaGCugCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 19512 0.66 0.758464
Target:  5'- gCGAcGACCUCGCCaCGugcaACGGAUaCAGGa -3'
miRNA:   3'- -GUUcCUGGAGUGGaGC----UGCCUG-GUCC- -5'
31896 5' -56.2 NC_006938.1 + 15842 0.66 0.757465
Target:  5'- -cAGGACCUgGucauguuCCUgGACGaGCCGGGu -3'
miRNA:   3'- guUCCUGGAgU-------GGAgCUGCcUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 45736 0.66 0.748416
Target:  5'- ---cGGCCUCccgGCCUCGAuCGG-UCAGGu -3'
miRNA:   3'- guucCUGGAG---UGGAGCU-GCCuGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 40754 0.66 0.748416
Target:  5'- gCAAGGcgcagcccaACCgggACCUCGACGGugUcaAGGc -3'
miRNA:   3'- -GUUCC---------UGGag-UGGAGCUGCCugG--UCC- -5'
31896 5' -56.2 NC_006938.1 + 20454 0.66 0.738257
Target:  5'- gGAGcGGCgUguCCUCG-CGGACCGGc -3'
miRNA:   3'- gUUC-CUGgAguGGAGCuGCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 17972 0.66 0.727996
Target:  5'- aCAGGGcauCCagGCCgUGugGGACCuGGa -3'
miRNA:   3'- -GUUCCu--GGagUGGaGCugCCUGGuCC- -5'
31896 5' -56.2 NC_006938.1 + 51984 0.66 0.707213
Target:  5'- gGAGGACCUCGCagaGACcguGGACgAGu -3'
miRNA:   3'- gUUCCUGGAGUGgagCUG---CCUGgUCc -5'
31896 5' -56.2 NC_006938.1 + 31599 0.67 0.696712
Target:  5'- -cAGGACCUC-CCUgacaaGCGGACCAa- -3'
miRNA:   3'- guUCCUGGAGuGGAgc---UGCCUGGUcc -5'
31896 5' -56.2 NC_006938.1 + 19712 0.67 0.696712
Target:  5'- -cAGGACC-CGCCg-GAccCGGACCAGc -3'
miRNA:   3'- guUCCUGGaGUGGagCU--GCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 17220 0.67 0.686152
Target:  5'- gCGAGGACCUUggugACCUCcuUGGA-CAGGu -3'
miRNA:   3'- -GUUCCUGGAG----UGGAGcuGCCUgGUCC- -5'
31896 5' -56.2 NC_006938.1 + 22267 0.67 0.675543
Target:  5'- gAAGGGCUUCGCCUgccaGGCcgucGCCGGGa -3'
miRNA:   3'- gUUCCUGGAGUGGAg---CUGcc--UGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 37146 0.67 0.664895
Target:  5'- -cGGGGCCUCugguCCcacggUGACagGGGCCGGGu -3'
miRNA:   3'- guUCCUGGAGu---GGa----GCUG--CCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 4956 0.67 0.664895
Target:  5'- gAAGGGCUUCGCCgu--CGGAgaCAGGa -3'
miRNA:   3'- gUUCCUGGAGUGGagcuGCCUg-GUCC- -5'
31896 5' -56.2 NC_006938.1 + 15461 0.67 0.664895
Target:  5'- --uGGGCCgcugGCCUCGACcaGGAgCGGGc -3'
miRNA:   3'- guuCCUGGag--UGGAGCUG--CCUgGUCC- -5'
31896 5' -56.2 NC_006938.1 + 44024 0.67 0.661694
Target:  5'- --cGG-UCUgGCCUCGGCGGgaauggagguggcaACCGGGa -3'
miRNA:   3'- guuCCuGGAgUGGAGCUGCC--------------UGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 29445 0.67 0.654218
Target:  5'- cCAAGGGCgUCACagaggcaugcugUUCGACGaGACCAa- -3'
miRNA:   3'- -GUUCCUGgAGUG------------GAGCUGC-CUGGUcc -5'
31896 5' -56.2 NC_006938.1 + 6744 0.67 0.643521
Target:  5'- -cGGGACgagCUCuuugCGAUGGGCCAGGg -3'
miRNA:   3'- guUCCUG---GAGuggaGCUGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 59517 0.67 0.643521
Target:  5'- --cGGAUgccaGCCUCGucCGGGCCAGGc -3'
miRNA:   3'- guuCCUGgag-UGGAGCu-GCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 16054 0.68 0.632815
Target:  5'- aGAGGAUCUCgACCgcgUCGGCGuAUCGGGc -3'
miRNA:   3'- gUUCCUGGAG-UGG---AGCUGCcUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.