miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 5510 0.66 0.699968
Target:  5'- aCGCGccacccgcCGCUGGCAGCAauGCCaaggCCGUCc -3'
miRNA:   3'- aGCGCu-------GCGGUCGUUGU--UGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50088 0.66 0.699968
Target:  5'- cCGCcaACGCUcaGGCcGCGAUCgucgCCGCCg -3'
miRNA:   3'- aGCGc-UGCGG--UCGuUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45607 0.66 0.699968
Target:  5'- ---gGACGCCAaCAGCuauguGACCgCCGCCu -3'
miRNA:   3'- agcgCUGCGGUcGUUG-----UUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 62150 0.66 0.699968
Target:  5'- cCGUGGCGaCCGGCGugucucCGAUCcCCGCg -3'
miRNA:   3'- aGCGCUGC-GGUCGUu-----GUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 24235 0.66 0.699968
Target:  5'- aUCGUGAaGCuCGGCAcCcgGACCgaCCGCCa -3'
miRNA:   3'- -AGCGCUgCG-GUCGUuG--UUGGa-GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 25495 0.66 0.699968
Target:  5'- cCGCGAcCGCgaCGGCAACA---UCCGCa -3'
miRNA:   3'- aGCGCU-GCG--GUCGUUGUuggAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 8976 0.66 0.699968
Target:  5'- aCGCu-CGCaCGGUGACGGCCUUguugaaCGCCu -3'
miRNA:   3'- aGCGcuGCG-GUCGUUGUUGGAG------GCGG- -5'
31897 3' -56.9 NC_006938.1 + 46989 0.66 0.698913
Target:  5'- gCGCGucaccguGCGCCacacggguGGCAACGACg-CUGCCc -3'
miRNA:   3'- aGCGC-------UGCGG--------UCGUUGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 44233 0.66 0.693631
Target:  5'- cCGCGuccaugaagaaccgUGCCAcCucCGGCCUCCGCCc -3'
miRNA:   3'- aGCGCu-------------GCGGUcGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 29302 0.66 0.689395
Target:  5'- gUGCGACGCCaccgGGacggaGACGACaucaUgCGCCg -3'
miRNA:   3'- aGCGCUGCGG----UCg----UUGUUGg---AgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8294 0.66 0.689395
Target:  5'- cCG-GugGUCGGCGAcCGGCUcgUCUGCCu -3'
miRNA:   3'- aGCgCugCGGUCGUU-GUUGG--AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 20115 0.66 0.689395
Target:  5'- cCGCGugGUCuccugGGCcuccGACAACCagCGCUg -3'
miRNA:   3'- aGCGCugCGG-----UCG----UUGUUGGagGCGG- -5'
31897 3' -56.9 NC_006938.1 + 32931 0.66 0.686213
Target:  5'- gUCGCGGCuCgGGCGcguucgugcucccgACGACCUCCucggucucccaGCCc -3'
miRNA:   3'- -AGCGCUGcGgUCGU--------------UGUUGGAGG-----------CGG- -5'
31897 3' -56.9 NC_006938.1 + 51496 0.66 0.67877
Target:  5'- aCGCGGaucacUGCCAGCuuguucagGGCgGACUUCCgGCCg -3'
miRNA:   3'- aGCGCU-----GCGGUCG--------UUG-UUGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 8231 0.66 0.67877
Target:  5'- aCGCGugGaCCGGgcgacCGACGACUgacUCgGCCu -3'
miRNA:   3'- aGCGCugC-GGUC-----GUUGUUGG---AGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 6902 0.66 0.67877
Target:  5'- -aGCGGCcCCGGCcuu-GCCUCCccaGCCg -3'
miRNA:   3'- agCGCUGcGGUCGuuguUGGAGG---CGG- -5'
31897 3' -56.9 NC_006938.1 + 41004 0.66 0.67877
Target:  5'- -aGCGACGCCAGgAAC--CCgaaCGCg -3'
miRNA:   3'- agCGCUGCGGUCgUUGuuGGag-GCGg -5'
31897 3' -56.9 NC_006938.1 + 2704 0.66 0.67877
Target:  5'- cCGCcugGGCGCUcguguaaacaagGGUcACGACCacUCCGCCg -3'
miRNA:   3'- aGCG---CUGCGG------------UCGuUGUUGG--AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24762 0.66 0.67877
Target:  5'- uUC-CGGC-CCAGCAagaagggcgcgGCGAUCgCCGCCa -3'
miRNA:   3'- -AGcGCUGcGGUCGU-----------UGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 16907 0.66 0.67877
Target:  5'- aCGCGGagaaGCuggcagaguuCAGCAAgAACCcacCCGCCg -3'
miRNA:   3'- aGCGCUg---CG----------GUCGUUgUUGGa--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.