miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 51288 0.69 0.519511
Target:  5'- gCGCGuucCGCCAGCucgccACGACCgugCagGCCg -3'
miRNA:   3'- aGCGCu--GCGGUCGu----UGUUGGa--Gg-CGG- -5'
31897 3' -56.9 NC_006938.1 + 51111 0.67 0.635948
Target:  5'- aUCGUGGCGaUCAGCAcGCGGCggUCGUCa -3'
miRNA:   3'- -AGCGCUGC-GGUCGU-UGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51045 0.66 0.646682
Target:  5'- nCGCGuuUGCCAGCGcCAuccugACCaUCGCCa -3'
miRNA:   3'- aGCGCu-GCGGUCGUuGU-----UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51015 0.69 0.469227
Target:  5'- gCGCguucGACGCU-GCcACcggGGCCUCCGCCg -3'
miRNA:   3'- aGCG----CUGCGGuCGuUG---UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50842 0.73 0.297643
Target:  5'- gUGUGACGCgGG--GCGAgCUCCGCCa -3'
miRNA:   3'- aGCGCUGCGgUCguUGUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50761 0.71 0.368376
Target:  5'- cCGgGGCacuGCgCGGCGACGAgCUCCGCUc -3'
miRNA:   3'- aGCgCUG---CG-GUCGUUGUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50088 0.66 0.699968
Target:  5'- cCGCcaACGCUcaGGCcGCGAUCgucgCCGCCg -3'
miRNA:   3'- aGCGc-UGCGG--UCGuUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 49308 0.68 0.52983
Target:  5'- cUUGUGaguGCGCCAGacggAGCAcCCUCCgGCCg -3'
miRNA:   3'- -AGCGC---UGCGGUCg---UUGUuGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 48945 0.66 0.657404
Target:  5'- uUCcCGAcCGUCGGCAGcCAGCCaucuggcaggUCUGCCa -3'
miRNA:   3'- -AGcGCU-GCGGUCGUU-GUUGG----------AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48536 0.68 0.582405
Target:  5'- aCGCuGaACGCCAaCAACAacGCCU-CGCCg -3'
miRNA:   3'- aGCG-C-UGCGGUcGUUGU--UGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48211 0.66 0.657404
Target:  5'- cCGCcaGCGCCAGCcgUAGgCUCC-CCa -3'
miRNA:   3'- aGCGc-UGCGGUCGuuGUUgGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 47434 0.67 0.603761
Target:  5'- -gGUGugG-CAGCGGuCGACCcagCCGCCc -3'
miRNA:   3'- agCGCugCgGUCGUU-GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 46989 0.66 0.698913
Target:  5'- gCGCGucaccguGCGCCacacggguGGCAACGACg-CUGCCc -3'
miRNA:   3'- aGCGC-------UGCGG--------UCGUUGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 46315 0.77 0.165189
Target:  5'- -gGCGAcCGCCuGCGACuccuucucGAUCUCCGCCa -3'
miRNA:   3'- agCGCU-GCGGuCGUUG--------UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45870 0.67 0.592
Target:  5'- gUCGCGAuaCGCCuugacaAGCGGCAugucgauGCCcUCGCCc -3'
miRNA:   3'- -AGCGCU--GCGG------UCGUUGU-------UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45784 0.66 0.646682
Target:  5'- aCGauuCGCCGGCAACAagGCCgaggCCcguGCCa -3'
miRNA:   3'- aGCgcuGCGGUCGUUGU--UGGa---GG---CGG- -5'
31897 3' -56.9 NC_006938.1 + 45607 0.66 0.699968
Target:  5'- ---gGACGCCAaCAGCuauguGACCgCCGCCu -3'
miRNA:   3'- agcgCUGCGGUcGUUG-----UUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45438 0.69 0.469227
Target:  5'- cUGCGAUGCCAuaGACG-CCUUCGUg -3'
miRNA:   3'- aGCGCUGCGGUcgUUGUuGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 44233 0.66 0.693631
Target:  5'- cCGCGuccaugaagaaccgUGCCAcCucCGGCCUCCGCCc -3'
miRNA:   3'- aGCGCu-------------GCGGUcGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 42809 0.67 0.592
Target:  5'- gCGCGAaguucaccuugucCGCCuccaucAGCGACAccuGCCUCCGgUCg -3'
miRNA:   3'- aGCGCU-------------GCGG------UCGUUGU---UGGAGGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.