miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 47434 0.67 0.603761
Target:  5'- -gGUGugG-CAGCGGuCGACCcagCCGCCc -3'
miRNA:   3'- agCGCugCgGUCGUU-GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 26032 0.67 0.614478
Target:  5'- -gGCGGCcucguccagcuuGCCAGCGgcgGCGGCCUCgaGCUc -3'
miRNA:   3'- agCGCUG------------CGGUCGU---UGUUGGAGg-CGG- -5'
31897 3' -56.9 NC_006938.1 + 28820 0.66 0.657404
Target:  5'- cCGCGACGCgcaCGGUcAguGCCU-CGCCu -3'
miRNA:   3'- aGCGCUGCG---GUCGuUguUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 32931 0.66 0.686213
Target:  5'- gUCGCGGCuCgGGCGcguucgugcucccgACGACCUCCucggucucccaGCCc -3'
miRNA:   3'- -AGCGCUGcGgUCGU--------------UGUUGGAGG-----------CGG- -5'
31897 3' -56.9 NC_006938.1 + 11610 0.68 0.52983
Target:  5'- uUCGCGGCagauCgGGCGGCAccGCCgagcccaCCGCCg -3'
miRNA:   3'- -AGCGCUGc---GgUCGUUGU--UGGa------GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 39843 0.68 0.568604
Target:  5'- uUCGCGgcaccacucagggcGCGCUcgAGCAucuCGGCCaugCCGCCc -3'
miRNA:   3'- -AGCGC--------------UGCGG--UCGUu--GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 27569 0.67 0.61877
Target:  5'- -gGCGAUGCCguugauggcggugcgAGUGAUGGCCUCgGCg -3'
miRNA:   3'- agCGCUGCGG---------------UCGUUGUUGGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 44233 0.66 0.693631
Target:  5'- cCGCGuccaugaagaaccgUGCCAcCucCGGCCUCCGCCc -3'
miRNA:   3'- aGCGCu-------------GCGGUcGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24900 0.68 0.571782
Target:  5'- gUCGCGAUggaGUCAGCGGgAuCCUCaccuGCCa -3'
miRNA:   3'- -AGCGCUG---CGGUCGUUgUuGGAGg---CGG- -5'
31897 3' -56.9 NC_006938.1 + 8976 0.66 0.699968
Target:  5'- aCGCu-CGCaCGGUGACGGCCUUguugaaCGCCu -3'
miRNA:   3'- aGCGcuGCG-GUCGUUGUUGGAG------GCGG- -5'
31897 3' -56.9 NC_006938.1 + 40069 0.67 0.614478
Target:  5'- cUGgGcCGCCuucuGCAGCu-CCUCUGCCc -3'
miRNA:   3'- aGCgCuGCGGu---CGUUGuuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 30426 0.67 0.593067
Target:  5'- cUCGCGuAUGCCcuuGGCGAUGuCgaCCGCCa -3'
miRNA:   3'- -AGCGC-UGCGG---UCGUUGUuGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51111 0.67 0.635948
Target:  5'- aUCGUGGCGaUCAGCAcGCGGCggUCGUCa -3'
miRNA:   3'- -AGCGCUGC-GGUCGU-UGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48945 0.66 0.657404
Target:  5'- uUCcCGAcCGUCGGCAGcCAGCCaucuggcaggUCUGCCa -3'
miRNA:   3'- -AGcGCU-GCGGUCGUU-GUUGG----------AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24500 0.66 0.668103
Target:  5'- cUCGUacAUGCCAGCGAC-ACCagcggugCCGUCg -3'
miRNA:   3'- -AGCGc-UGCGGUCGUUGuUGGa------GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51496 0.66 0.67877
Target:  5'- aCGCGGaucacUGCCAGCuuguucagGGCgGACUUCCgGCCg -3'
miRNA:   3'- aGCGCU-----GCGGUCG--------UUG-UUGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 42432 0.69 0.513358
Target:  5'- cUCGUGGCccgcgcgggacuccaGCCAGUcgGACAGCaUCCGCUc -3'
miRNA:   3'- -AGCGCUG---------------CGGUCG--UUGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 57440 0.69 0.519511
Target:  5'- cCGUGGCuCCGGCAuagucGCcccauGCCUCgGCCa -3'
miRNA:   3'- aGCGCUGcGGUCGU-----UGu----UGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 7177 0.68 0.550684
Target:  5'- gUUGCgGACGCCAcccgucgcguuGUAGCAGCUUCCcuCCa -3'
miRNA:   3'- -AGCG-CUGCGGU-----------CGUUGUUGGAGGc-GG- -5'
31897 3' -56.9 NC_006938.1 + 38780 0.68 0.561206
Target:  5'- -aGCuGCGCCauGGCGGCGAUCgCCGCg -3'
miRNA:   3'- agCGcUGCGG--UCGUUGUUGGaGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.