miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31901 5' -53 NC_006938.1 + 46052 0.66 0.864209
Target:  5'- cGGCccgcCGUCGAugGCAAaGCCauaGCCAGCg- -3'
miRNA:   3'- -CCGu---GCAGCU--UGUUgUGG---UGGUCGaa -5'
31901 5' -53 NC_006938.1 + 47822 0.66 0.864209
Target:  5'- uGGCGCGacccCGGACGcggACAUCAgCGGCa- -3'
miRNA:   3'- -CCGUGCa---GCUUGU---UGUGGUgGUCGaa -5'
31901 5' -53 NC_006938.1 + 11004 0.66 0.83845
Target:  5'- uGGCAgccuugucuCGUCGA---ACGCCAUCAGUUg -3'
miRNA:   3'- -CCGU---------GCAGCUuguUGUGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 51478 0.66 0.837556
Target:  5'- gGGUucuCGUCGGcggugacGCGgauCACUGCCAGCUUg -3'
miRNA:   3'- -CCGu--GCAGCU-------UGUu--GUGGUGGUCGAA- -5'
31901 5' -53 NC_006938.1 + 38039 0.66 0.829406
Target:  5'- aGCACGcCGAGCGgauggccaAgGCCGCUGGCa- -3'
miRNA:   3'- cCGUGCaGCUUGU--------UgUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 63513 0.66 0.828489
Target:  5'- cGCACGUucaaggaCGGACcGCACUGgCAGCUg -3'
miRNA:   3'- cCGUGCA-------GCUUGuUGUGGUgGUCGAa -5'
31901 5' -53 NC_006938.1 + 35915 0.66 0.820148
Target:  5'- aGGCGCGucaUCGGACcgu-UCGCCAGCg- -3'
miRNA:   3'- -CCGUGC---AGCUUGuuguGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 16488 0.66 0.820148
Target:  5'- cGCACaUCGAGCAccacuuccGCACCGCCAu--- -3'
miRNA:   3'- cCGUGcAGCUUGU--------UGUGGUGGUcgaa -5'
31901 5' -53 NC_006938.1 + 39572 0.67 0.810687
Target:  5'- cGGC-CGUCGAcuucucggACGACgucgccGCCACUGGCa- -3'
miRNA:   3'- -CCGuGCAGCU--------UGUUG------UGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 57464 0.67 0.810687
Target:  5'- uGG-ACGUCGAcCAGgACUAUCAGCa- -3'
miRNA:   3'- -CCgUGCAGCUuGUUgUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 47162 0.67 0.810687
Target:  5'- aGCACGUCGAGCu---CgAUCGGCUc -3'
miRNA:   3'- cCGUGCAGCUUGuuguGgUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 10602 0.67 0.801034
Target:  5'- aGCugGUCGAu--GCACCACCcucgggAGCc- -3'
miRNA:   3'- cCGugCAGCUuguUGUGGUGG------UCGaa -5'
31901 5' -53 NC_006938.1 + 63547 0.67 0.801034
Target:  5'- cGGUG-GUCGAGC--CACCGCCAGUc- -3'
miRNA:   3'- -CCGUgCAGCUUGuuGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 37138 0.67 0.801034
Target:  5'- cGGCGagugccagagauUGUgGAACGagucGCGCCACUAGCg- -3'
miRNA:   3'- -CCGU------------GCAgCUUGU----UGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 62753 0.67 0.801034
Target:  5'- gGGCACGga-GGCGGC-CaCACCGGCUg -3'
miRNA:   3'- -CCGUGCagcUUGUUGuG-GUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 39668 0.67 0.781193
Target:  5'- cGCGCGUCGAuC-ACGCCcuugaaGCCAGUg- -3'
miRNA:   3'- cCGUGCAGCUuGuUGUGG------UGGUCGaa -5'
31901 5' -53 NC_006938.1 + 22259 0.67 0.781193
Target:  5'- uGGCGucugUGUUGAcCGugGCGCCACCGGCc- -3'
miRNA:   3'- -CCGU----GCAGCUuGU--UGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 41303 0.67 0.781193
Target:  5'- uGGCGCcaCGGuCAACACagaCGCCAGCUc -3'
miRNA:   3'- -CCGUGcaGCUuGUUGUG---GUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 50372 0.67 0.781193
Target:  5'- cGGCACGg-GAGCGGagGCCACC-GCUc -3'
miRNA:   3'- -CCGUGCagCUUGUUg-UGGUGGuCGAa -5'
31901 5' -53 NC_006938.1 + 21676 0.67 0.771028
Target:  5'- aGC-UGUCGGGCAACcuGCC-CCGGCUc -3'
miRNA:   3'- cCGuGCAGCUUGUUG--UGGuGGUCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.