Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31901 | 5' | -53 | NC_006938.1 | + | 39911 | 0.68 | 0.729015 |
Target: 5'- cGGCACGagGAGaccGCGCCACCGuccGCg- -3' miRNA: 3'- -CCGUGCagCUUgu-UGUGGUGGU---CGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 39859 | 0.69 | 0.674347 |
Target: 5'- gGGCGCGcUCGAGCAucucggccAUGCCGCCcuGGCc- -3' miRNA: 3'- -CCGUGC-AGCUUGU--------UGUGGUGG--UCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 39668 | 0.67 | 0.781193 |
Target: 5'- cGCGCGUCGAuC-ACGCCcuugaaGCCAGUg- -3' miRNA: 3'- cCGUGCAGCUuGuUGUGG------UGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 39572 | 0.67 | 0.810687 |
Target: 5'- cGGC-CGUCGAcuucucggACGACgucgccGCCACUGGCa- -3' miRNA: 3'- -CCGuGCAGCU--------UGUUG------UGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 39021 | 0.73 | 0.46763 |
Target: 5'- uGGCAUGcCGAAUGGCACUGCC-GCUg -3' miRNA: 3'- -CCGUGCaGCUUGUUGUGGUGGuCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 38114 | 0.75 | 0.363353 |
Target: 5'- aGCugGUCGAACGGCAgcuCCACguGCa- -3' miRNA: 3'- cCGugCAGCUUGUUGU---GGUGguCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 38039 | 0.66 | 0.829406 |
Target: 5'- aGCACGcCGAGCGgauggccaAgGCCGCUGGCa- -3' miRNA: 3'- cCGUGCaGCUUGU--------UgUGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 37138 | 0.67 | 0.801034 |
Target: 5'- cGGCGagugccagagauUGUgGAACGagucGCGCCACUAGCg- -3' miRNA: 3'- -CCGU------------GCAgCUUGU----UGUGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 36724 | 0.68 | 0.760716 |
Target: 5'- cGCuCGUCG-ACGACAUCggcaACCGGCUg -3' miRNA: 3'- cCGuGCAGCuUGUUGUGG----UGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 35915 | 0.66 | 0.820148 |
Target: 5'- aGGCGCGucaUCGGACcgu-UCGCCAGCg- -3' miRNA: 3'- -CCGUGC---AGCUUGuuguGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 33570 | 0.72 | 0.530589 |
Target: 5'- cGGUuCGUCG-GCAACcgugccGCCACCGGCUc -3' miRNA: 3'- -CCGuGCAGCuUGUUG------UGGUGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 32780 | 0.71 | 0.585281 |
Target: 5'- aGGCACaGcCGAACuACAUCGCCcAGCUc -3' miRNA: 3'- -CCGUG-CaGCUUGuUGUGGUGG-UCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 30713 | 0.71 | 0.55665 |
Target: 5'- cGGcCACGaugucccagcugcccUCGAGCcACGCgGCCAGCUUg -3' miRNA: 3'- -CC-GUGC---------------AGCUUGuUGUGgUGGUCGAA- -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 26726 | 0.72 | 0.51986 |
Target: 5'- uGGCuACGUCG-GCAuCGCCAgCCAGCa- -3' miRNA: 3'- -CCG-UGCAGCuUGUuGUGGU-GGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 25446 | 0.68 | 0.750269 |
Target: 5'- uGCACGUgGAGCuGCcguuCgACCAGCUg -3' miRNA: 3'- cCGUGCAgCUUGuUGu---GgUGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 23875 | 0.68 | 0.739698 |
Target: 5'- aGGCACa--GuGCAACAUCACUGGCUUc -3' miRNA: 3'- -CCGUGcagCuUGUUGUGGUGGUCGAA- -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 22259 | 0.67 | 0.781193 |
Target: 5'- uGGCGucugUGUUGAcCGugGCGCCACCGGCc- -3' miRNA: 3'- -CCGU----GCAGCUuGU--UGUGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 21676 | 0.67 | 0.771028 |
Target: 5'- aGC-UGUCGGGCAACcuGCC-CCGGCUc -3' miRNA: 3'- cCGuGCAGCUUGUUG--UGGuGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 16488 | 0.66 | 0.820148 |
Target: 5'- cGCACaUCGAGCAccacuuccGCACCGCCAu--- -3' miRNA: 3'- cCGUGcAGCUUGU--------UGUGGUGGUcgaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 12555 | 0.7 | 0.64096 |
Target: 5'- uGGCAgCGUCGAACG-CGCCgacuGCCuGCa- -3' miRNA: 3'- -CCGU-GCAGCUUGUuGUGG----UGGuCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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