miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32068 5' -58.8 NC_007016.1 + 91985 0.66 0.709354
Target:  5'- aAGGCCAcCAcGCGGGCCGaaAAGguGc -3'
miRNA:   3'- -UCCGGUcGUuCGUCCGGUcgUUCguC- -5'
32068 5' -58.8 NC_007016.1 + 22337 0.66 0.709354
Target:  5'- cGGGUCAGCA--CGGGC-AGCGAGgGGc -3'
miRNA:   3'- -UCCGGUCGUucGUCCGgUCGUUCgUC- -5'
32068 5' -58.8 NC_007016.1 + 107271 0.66 0.709354
Target:  5'- uGGcGCCAGUucucgcAGCgAGGCCAGCAGucccGCGu -3'
miRNA:   3'- -UC-CGGUCGu-----UCG-UCCGGUCGUU----CGUc -5'
32068 5' -58.8 NC_007016.1 + 130348 0.66 0.688874
Target:  5'- gGGGCCcggGGCGccucGGCgGGGCCGGCcccgGGGCGc -3'
miRNA:   3'- -UCCGG---UCGU----UCG-UCCGGUCG----UUCGUc -5'
32068 5' -58.8 NC_007016.1 + 22012 0.66 0.677522
Target:  5'- -cGCCAGguGGCuGGCCAcGCcugguuuccgucgAGGCGGa -3'
miRNA:   3'- ucCGGUCguUCGuCCGGU-CG-------------UUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 39981 0.66 0.668198
Target:  5'- uGGCCA-CGAgguggugggacGCAGGCCAGCGuccgAGCuGa -3'
miRNA:   3'- uCCGGUcGUU-----------CGUCCGGUCGU----UCGuC- -5'
32068 5' -58.8 NC_007016.1 + 125588 0.66 0.668198
Target:  5'- cAGGCguGCcgguGCGcGCCAGCugcuGGCAGu -3'
miRNA:   3'- -UCCGguCGuu--CGUcCGGUCGu---UCGUC- -5'
32068 5' -58.8 NC_007016.1 + 10332 0.67 0.65573
Target:  5'- uGGGCCAGCAcgacguuGGCGGGgCCGGgAaagagaucgcucuGGCGc -3'
miRNA:   3'- -UCCGGUCGU-------UCGUCC-GGUCgU-------------UCGUc -5'
32068 5' -58.8 NC_007016.1 + 68046 0.67 0.647401
Target:  5'- cGGGCCGGgGGccGCGgauguugaaccGGCCAGCGuGGCGGc -3'
miRNA:   3'- -UCCGGUCgUU--CGU-----------CCGGUCGU-UCGUC- -5'
32068 5' -58.8 NC_007016.1 + 105469 0.67 0.636979
Target:  5'- gAGGCUaugcuGGCGugugcggguuuGGCGGGCuCGGUGAGCAc -3'
miRNA:   3'- -UCCGG-----UCGU-----------UCGUCCG-GUCGUUCGUc -5'
32068 5' -58.8 NC_007016.1 + 8596 0.67 0.636979
Target:  5'- gGGGUCGGUAgcuguuccucGGgGGGCUGGCAggaAGCGGu -3'
miRNA:   3'- -UCCGGUCGU----------UCgUCCGGUCGU---UCGUC- -5'
32068 5' -58.8 NC_007016.1 + 13267 0.67 0.626553
Target:  5'- uGGCCGcGCGgcucuGGCGGGC-GGCAAGUAc -3'
miRNA:   3'- uCCGGU-CGU-----UCGUCCGgUCGUUCGUc -5'
32068 5' -58.8 NC_007016.1 + 92719 0.67 0.616132
Target:  5'- ---aCAGUugGAGCGGGCCGGUgcGCGGg -3'
miRNA:   3'- uccgGUCG--UUCGUCCGGUCGuuCGUC- -5'
32068 5' -58.8 NC_007016.1 + 21470 0.68 0.595334
Target:  5'- uGGGCCcGUAAcgcuugccGCGGGCCGcuggaauuGCAAGCAa -3'
miRNA:   3'- -UCCGGuCGUU--------CGUCCGGU--------CGUUCGUc -5'
32068 5' -58.8 NC_007016.1 + 92463 0.68 0.595334
Target:  5'- aAGGCCgacGGUGAGCAGGCCG--AGGUAu -3'
miRNA:   3'- -UCCGG---UCGUUCGUCCGGUcgUUCGUc -5'
32068 5' -58.8 NC_007016.1 + 130146 0.68 0.584973
Target:  5'- aGGGCCGGgAgccggGGgAGGCCGGC-GGCGc -3'
miRNA:   3'- -UCCGGUCgU-----UCgUCCGGUCGuUCGUc -5'
32068 5' -58.8 NC_007016.1 + 130279 0.68 0.584973
Target:  5'- gGGGcCCGGCgGAGCGGGaCCcGgGGGCGGc -3'
miRNA:   3'- -UCC-GGUCG-UUCGUCC-GGuCgUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 116136 0.68 0.574648
Target:  5'- uGGCCgGGCAgaGGCcGGCCGGCcaAAGguGc -3'
miRNA:   3'- uCCGG-UCGU--UCGuCCGGUCG--UUCguC- -5'
32068 5' -58.8 NC_007016.1 + 63131 0.69 0.523788
Target:  5'- cGGCCAGgGAgaaccGguGGCCGcGUGAGCGGc -3'
miRNA:   3'- uCCGGUCgUU-----CguCCGGU-CGUUCGUC- -5'
32068 5' -58.8 NC_007016.1 + 45159 0.69 0.523788
Target:  5'- uAGGCCGGgAuauGCAGGCggUAGCAcgGGCAc -3'
miRNA:   3'- -UCCGGUCgUu--CGUCCG--GUCGU--UCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.