miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32071 5' -59.2 NC_007016.1 + 70961 0.66 0.801414
Target:  5'- uGGGCGCgC-CGCCuccUGa-GCGCCCCg -3'
miRNA:   3'- -CCUGCG-GaGCGGcauACgcUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 101686 0.66 0.792655
Target:  5'- cGGACGCUgaUCGCCcaAUuCGACGgCCa -3'
miRNA:   3'- -CCUGCGG--AGCGGcaUAcGCUGCgGGg -5'
32071 5' -59.2 NC_007016.1 + 26309 0.66 0.783759
Target:  5'- --cCGCCUCuGCCccccgcgcggGUGCGugccCGCCCCu -3'
miRNA:   3'- ccuGCGGAG-CGGca--------UACGCu---GCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 67968 0.66 0.783759
Target:  5'- cGGGCGUUgacugCGggaaacCCGUAUGCG-CGCCgCa -3'
miRNA:   3'- -CCUGCGGa----GC------GGCAUACGCuGCGGgG- -5'
32071 5' -59.2 NC_007016.1 + 129894 0.66 0.774734
Target:  5'- aGGCGCC-CgGCCGgcgGCGGCGCggggCCg -3'
miRNA:   3'- cCUGCGGaG-CGGCauaCGCUGCGg---GG- -5'
32071 5' -59.2 NC_007016.1 + 16744 0.66 0.774734
Target:  5'- cGGGgGCCacgcgCGCCGcGUccGCGuCGCCgCCg -3'
miRNA:   3'- -CCUgCGGa----GCGGCaUA--CGCuGCGG-GG- -5'
32071 5' -59.2 NC_007016.1 + 81587 0.66 0.765588
Target:  5'- --cUGCCa-GCCGcGUGCaaGAUGCCCCu -3'
miRNA:   3'- ccuGCGGagCGGCaUACG--CUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 22495 0.66 0.75633
Target:  5'- gGGGCGCCaCGCg----GCGGCGCCg- -3'
miRNA:   3'- -CCUGCGGaGCGgcauaCGCUGCGGgg -5'
32071 5' -59.2 NC_007016.1 + 14291 0.67 0.746968
Target:  5'- uGGAucacCGCgUCGCCGUcgcGCGugGCgcacgggaauCCCg -3'
miRNA:   3'- -CCU----GCGgAGCGGCAua-CGCugCG----------GGG- -5'
32071 5' -59.2 NC_007016.1 + 41775 0.67 0.746027
Target:  5'- -cACGUCUCcgagggaGCCcUGcUGCGACGCCCa -3'
miRNA:   3'- ccUGCGGAG-------CGGcAU-ACGCUGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 13607 0.67 0.737511
Target:  5'- gGGACGaCUgGCCGUugGCcGCGCgCCg -3'
miRNA:   3'- -CCUGCgGAgCGGCAuaCGcUGCGgGG- -5'
32071 5' -59.2 NC_007016.1 + 103692 0.67 0.727967
Target:  5'- gGGGCGCCagcagaGCCGU----GACGCuCCCa -3'
miRNA:   3'- -CCUGCGGag----CGGCAuacgCUGCG-GGG- -5'
32071 5' -59.2 NC_007016.1 + 809 0.67 0.718345
Target:  5'- gGGAgGgCUCGggucCCGUGUccucGUGugGCCCUg -3'
miRNA:   3'- -CCUgCgGAGC----GGCAUA----CGCugCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 15169 0.67 0.718345
Target:  5'- aGGGCGauccggcgcacCCUgGCgGcGUGCGACGaCCCg -3'
miRNA:   3'- -CCUGC-----------GGAgCGgCaUACGCUGCgGGG- -5'
32071 5' -59.2 NC_007016.1 + 68458 0.67 0.708653
Target:  5'- gGGGgGUUUa-CUGU-UGCGGCGCCCCg -3'
miRNA:   3'- -CCUgCGGAgcGGCAuACGCUGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 21784 0.67 0.708653
Target:  5'- cGcCGCgCUCGCCGUgcuuggccacggAUGaCGGCGUCCa -3'
miRNA:   3'- cCuGCG-GAGCGGCA------------UAC-GCUGCGGGg -5'
32071 5' -59.2 NC_007016.1 + 102313 0.67 0.6989
Target:  5'- cGGACGCaaucaaCUCGCCugccaaUGUcGCGACuCCCCc -3'
miRNA:   3'- -CCUGCG------GAGCGGc-----AUA-CGCUGcGGGG- -5'
32071 5' -59.2 NC_007016.1 + 35580 0.67 0.6989
Target:  5'- aGACGUaCUCGCCGUuggauagcUGCacUGCCCCc -3'
miRNA:   3'- cCUGCG-GAGCGGCAu-------ACGcuGCGGGG- -5'
32071 5' -59.2 NC_007016.1 + 16904 0.68 0.669354
Target:  5'- gGGGCGCCUU-CCGa--GCGcGCGCCgCCg -3'
miRNA:   3'- -CCUGCGGAGcGGCauaCGC-UGCGG-GG- -5'
32071 5' -59.2 NC_007016.1 + 22194 0.68 0.659438
Target:  5'- gGGGCGCguuguCUCGUCGUGgcucGCaaucacCGCCCCg -3'
miRNA:   3'- -CCUGCG-----GAGCGGCAUa---CGcu----GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.