miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32085 3' -55.6 NC_007016.1 + 22331 0.66 0.913548
Target:  5'- gCGCCcCCAGA--CGC--GCGGGGCc -3'
miRNA:   3'- aGCGGuGGUCUucGCGuuUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 76629 0.66 0.913548
Target:  5'- gCGCCguccgcguucaGCCAG-GGCGUuucugcgaauAAACGGGGCc -3'
miRNA:   3'- aGCGG-----------UGGUCuUCGCG----------UUUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 130477 0.66 0.913548
Target:  5'- -aGCCccccucCCGGcGGCGCGGAgaccaccuuuCGGGGCGa -3'
miRNA:   3'- agCGGu-----GGUCuUCGCGUUU----------GCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 7860 0.66 0.913548
Target:  5'- gUCGCCGCCAcGggGCGUcuGCGccccguGAUa -3'
miRNA:   3'- -AGCGGUGGU-CuuCGCGuuUGCc-----CUGc -5'
32085 3' -55.6 NC_007016.1 + 38187 0.66 0.907485
Target:  5'- gUGCCgACCAuu-GCGU-AugGGGACGg -3'
miRNA:   3'- aGCGG-UGGUcuuCGCGuUugCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 117497 0.66 0.901181
Target:  5'- cCGCCAauuuguCCAGAGGCGgCGcAGCGGcGcCGa -3'
miRNA:   3'- aGCGGU------GGUCUUCGC-GU-UUGCC-CuGC- -5'
32085 3' -55.6 NC_007016.1 + 83656 0.66 0.901181
Target:  5'- -gGCCGCCGGAGGaucCGUGucguGCGGGGa- -3'
miRNA:   3'- agCGGUGGUCUUC---GCGUu---UGCCCUgc -5'
32085 3' -55.6 NC_007016.1 + 75406 0.66 0.901181
Target:  5'- cUCGCCAcCCGGAcccaccuuAuaGCAGugGGGuACGc -3'
miRNA:   3'- -AGCGGU-GGUCU--------UcgCGUUugCCC-UGC- -5'
32085 3' -55.6 NC_007016.1 + 109498 0.66 0.901181
Target:  5'- -gGCCACCAuAAGUGUAGccguccaugaucGgGGGGCGu -3'
miRNA:   3'- agCGGUGGUcUUCGCGUU------------UgCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 62293 0.66 0.890604
Target:  5'- gUGCCGCCuguaAGAGGCacGCAucgcgcagggacugcAACGGuGACGa -3'
miRNA:   3'- aGCGGUGG----UCUUCG--CGU---------------UUGCC-CUGC- -5'
32085 3' -55.6 NC_007016.1 + 110706 0.66 0.880863
Target:  5'- gUGCCuggauGCCGGuuGCGUGGACuGGGGCc -3'
miRNA:   3'- aGCGG-----UGGUCuuCGCGUUUG-CCCUGc -5'
32085 3' -55.6 NC_007016.1 + 15092 0.66 0.88015
Target:  5'- aUCGaCCACCAGGAccggcucGuCGUAAAacccCGGGAUGg -3'
miRNA:   3'- -AGC-GGUGGUCUU-------C-GCGUUU----GCCCUGC- -5'
32085 3' -55.6 NC_007016.1 + 126636 0.67 0.866185
Target:  5'- -gGCCGCCGcGGcccuuAGUGCAGACGaGGAgGc -3'
miRNA:   3'- agCGGUGGU-CU-----UCGCGUUUGC-CCUgC- -5'
32085 3' -55.6 NC_007016.1 + 102983 0.67 0.866185
Target:  5'- cUCGCCGacacuuCCAGGucGUGUAGACGcuGGGCGa -3'
miRNA:   3'- -AGCGGU------GGUCUu-CGCGUUUGC--CCUGC- -5'
32085 3' -55.6 NC_007016.1 + 116920 0.67 0.864669
Target:  5'- gUCGCCAagAGggGgGCugguaacaaaacAACGGGugGa -3'
miRNA:   3'- -AGCGGUggUCuuCgCGu-----------UUGCCCugC- -5'
32085 3' -55.6 NC_007016.1 + 108530 0.67 0.863908
Target:  5'- gUGCaCACCGGGaccgccccgccuuuAGCGUAuACGGGAg- -3'
miRNA:   3'- aGCG-GUGGUCU--------------UCGCGUuUGCCCUgc -5'
32085 3' -55.6 NC_007016.1 + 77868 0.67 0.85852
Target:  5'- cCGCCACCcaaaucuGUGCAAAcggauCGGGugGa -3'
miRNA:   3'- aGCGGUGGucuu---CGCGUUU-----GCCCugC- -5'
32085 3' -55.6 NC_007016.1 + 82272 0.67 0.85852
Target:  5'- cCGgUACCAGAGagccauGCGCcgugcAACGGGGCa -3'
miRNA:   3'- aGCgGUGGUCUU------CGCGu----UUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 129896 0.67 0.85852
Target:  5'- gCGCCcgGCCGGcGGCGgc-GCGGGGCc -3'
miRNA:   3'- aGCGG--UGGUCuUCGCguuUGCCCUGc -5'
32085 3' -55.6 NC_007016.1 + 11701 0.68 0.814589
Target:  5'- aCGCCACCauuaAGAAGCugucugauacacacGCGgcaAACGGGuCGg -3'
miRNA:   3'- aGCGGUGG----UCUUCG--------------CGU---UUGCCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.