Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32568 | 3' | -45.7 | NC_007151.1 | + | 31467 | 0.7 | 0.997906 |
Target: 5'- -aUCGUCAUCGAAAUUGcCAaCGAUAa -3' miRNA: 3'- ucAGCAGUAGCUUUAGUaGUaGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 33554 | 0.82 | 0.730502 |
Target: 5'- uGUCGUCAUCGuccGAGUCuUCGUCGACc -3' miRNA: 3'- uCAGCAGUAGC---UUUAGuAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 33704 | 0.83 | 0.666013 |
Target: 5'- cGUCGUCGUCGuAAUCGUCAUCGcuGCu -3' miRNA: 3'- uCAGCAGUAGCuUUAGUAGUAGC--UGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 35546 | 0.73 | 0.985573 |
Target: 5'- cGGUCgGUCGUUGAAcgCGauucuaauguuuuuuUCAUCGACAu -3' miRNA: 3'- -UCAG-CAGUAGCUUuaGU---------------AGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 36215 | 0.74 | 0.978301 |
Target: 5'- gAGUCGUUAUCGucGUCGcugaCAUUGACAc -3' miRNA: 3'- -UCAGCAGUAGCuuUAGUa---GUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 37156 | 0.67 | 0.999906 |
Target: 5'- -uUUGUCGUCGAcgccaaaagacgaaAAUUuaauGUCAUCGACGa -3' miRNA: 3'- ucAGCAGUAGCU--------------UUAG----UAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 37554 | 0.67 | 0.999951 |
Target: 5'- -aUCGUCAUCGuc-UCgaaaacuacuGUCGUCGACu -3' miRNA: 3'- ucAGCAGUAGCuuuAG----------UAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 37877 | 0.66 | 0.99999 |
Target: 5'- cGUUcgGUCAcCGAAGUCAUCAgCGAa- -3' miRNA: 3'- uCAG--CAGUaGCUUUAGUAGUaGCUgu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 41313 | 0.71 | 0.997008 |
Target: 5'- uGUUGcucuUCAUCGA--UCAUCAUCGAUc -3' miRNA: 3'- uCAGC----AGUAGCUuuAGUAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 43076 | 0.73 | 0.988269 |
Target: 5'- -cUCGUCAUCacGAUCAuuaUCGUCGGCGg -3' miRNA: 3'- ucAGCAGUAGcuUUAGU---AGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 44266 | 0.7 | 0.998823 |
Target: 5'- cGUCGUCGUCGccgcccUCGUCuUCGugGu -3' miRNA: 3'- uCAGCAGUAGCuuu---AGUAGuAGCugU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 44504 | 0.66 | 0.999981 |
Target: 5'- -uUCGUCGUCG---UCGUCGcuuUCGACc -3' miRNA: 3'- ucAGCAGUAGCuuuAGUAGU---AGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 44641 | 0.7 | 0.998262 |
Target: 5'- uGUCGUUGcagcCGAGcgcccaucuucGUCGUCAUCGGCAa -3' miRNA: 3'- uCAGCAGUa---GCUU-----------UAGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 47876 | 0.78 | 0.871209 |
Target: 5'- gAGagGUCAUCGAGAUCcgggGUCGUCGAUu -3' miRNA: 3'- -UCagCAGUAGCUUUAG----UAGUAGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 48378 | 0.81 | 0.775699 |
Target: 5'- cGUCGUUaaaagcaucgacauuGUCGAAAUCGUCcgCGACAa -3' miRNA: 3'- uCAGCAG---------------UAGCUUUAGUAGuaGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 48576 | 0.7 | 0.998538 |
Target: 5'- --aUGUUAUCGGAAUCGUCAcgaacgaUUGGCAu -3' miRNA: 3'- ucaGCAGUAGCUUUAGUAGU-------AGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 49115 | 0.75 | 0.955388 |
Target: 5'- cGUCGUCAUCGAc--CAUCGU-GACAa -3' miRNA: 3'- uCAGCAGUAGCUuuaGUAGUAgCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 51474 | 0.76 | 0.9466 |
Target: 5'- gAGUCGUCAcugUCGuuAUCGUCAucuUCGAUg -3' miRNA: 3'- -UCAGCAGU---AGCuuUAGUAGU---AGCUGu -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 57232 | 0.71 | 0.997008 |
Target: 5'- gAGUCGcCAgaacaaaCGu-GUCAUCGUCGGCAa -3' miRNA: 3'- -UCAGCaGUa------GCuuUAGUAGUAGCUGU- -5' |
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32568 | 3' | -45.7 | NC_007151.1 | + | 57950 | 0.69 | 0.999499 |
Target: 5'- uGUUGuUCAUCGucuUCGUCuUCGACGa -3' miRNA: 3'- uCAGC-AGUAGCuuuAGUAGuAGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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