miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 94716 0.66 0.999755
Target:  5'- -cCGAUGACGAUuAUGAUGAAggcGUCGAc -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUGUUU---UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 26249 0.66 0.999755
Target:  5'- aGCGGaauuguUGACGuuCGACGACu-GAUCGAa -3'
miRNA:   3'- cUGCU------GCUGCu-GCUGCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 19845 0.66 0.999755
Target:  5'- aACucUGGCGACGGuCGACuauAAUCGAa -3'
miRNA:   3'- cUGcuGCUGCUGCU-GCUGuu-UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 46508 0.66 0.999689
Target:  5'- cACGACaACGGacuCGugGACAucagcGGAUCGAu -3'
miRNA:   3'- cUGCUGcUGCU---GCugCUGU-----UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 138374 0.66 0.999689
Target:  5'- aACGAUGA-GGCG-CGACccAAUCGAa -3'
miRNA:   3'- cUGCUGCUgCUGCuGCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 43659 0.66 0.999689
Target:  5'- aAUGuCGACGACGGCG-CGuuAGUCGu -3'
miRNA:   3'- cUGCuGCUGCUGCUGCuGUu-UUAGCu -5'
32575 5' -48.4 NC_007151.1 + 64690 0.66 0.999689
Target:  5'- -uUGGCGcCGGCGACGGCAGcguacUCGu -3'
miRNA:   3'- cuGCUGCuGCUGCUGCUGUUuu---AGCu -5'
32575 5' -48.4 NC_007151.1 + 82983 0.66 0.999609
Target:  5'- -uCGACGACGAUaGCGAgAAAAU-GAa -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUgUUUUAgCU- -5'
32575 5' -48.4 NC_007151.1 + 95487 0.66 0.999609
Target:  5'- -uCGGCGGCaGCGugGAUc-GGUCGAa -3'
miRNA:   3'- cuGCUGCUGcUGCugCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 41559 0.66 0.999512
Target:  5'- -cCGcCGcCGGCGACGGCAAuAUCu- -3'
miRNA:   3'- cuGCuGCuGCUGCUGCUGUUuUAGcu -5'
32575 5' -48.4 NC_007151.1 + 40062 0.66 0.999512
Target:  5'- --gGAUGugGaACGAauACAAAAUCGAa -3'
miRNA:   3'- cugCUGCugC-UGCUgcUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 119104 0.66 0.999512
Target:  5'- gGGCGAauUGACGACGGauuuaaGACGAuuAUUGAa -3'
miRNA:   3'- -CUGCU--GCUGCUGCUg-----CUGUUu-UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 117866 0.66 0.999394
Target:  5'- cGACGAgcuCGACGACacCGACAGGGgcagCGGc -3'
miRNA:   3'- -CUGCU---GCUGCUGcuGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 91908 0.66 0.999394
Target:  5'- aGCGACGACGcccgccCGAUGAUc--GUCGAc -3'
miRNA:   3'- cUGCUGCUGCu-----GCUGCUGuuuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 97715 0.66 0.999394
Target:  5'- -uCGGCGGCaGCGAC-ACAAAcUCGAu -3'
miRNA:   3'- cuGCUGCUGcUGCUGcUGUUUuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 84314 0.67 0.999252
Target:  5'- uGAUGAUGAUGAUGAUGAUgu-AUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGuuuUAGcu -5'
32575 5' -48.4 NC_007151.1 + 125014 0.67 0.999252
Target:  5'- aGCu-CGAUGuuCGACGugAAAGUCGAu -3'
miRNA:   3'- cUGcuGCUGCu-GCUGCugUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 91976 0.67 0.999252
Target:  5'- aGGCGGCGcucaaGCGGCGGacaauacaGACGcAGGUCGAc -3'
miRNA:   3'- -CUGCUGC-----UGCUGCUg-------CUGU-UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 41193 0.67 0.999252
Target:  5'- ---aGCGACGcCGcCGGCAAAGUCGu -3'
miRNA:   3'- cugcUGCUGCuGCuGCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 130740 0.67 0.999083
Target:  5'- aGCGAUGACGAUcgaGAUGGguAuGUCGAg -3'
miRNA:   3'- cUGCUGCUGCUG---CUGCUguUuUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.