Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32575 | 5' | -48.4 | NC_007151.1 | + | 19845 | 0.66 | 0.999755 |
Target: 5'- aACucUGGCGACGGuCGACuauAAUCGAa -3' miRNA: 3'- cUGcuGCUGCUGCU-GCUGuu-UUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 36383 | 0.69 | 0.994478 |
Target: 5'- aGCGACGACGAUaACGACucuauugcuagacaAGAAUCa- -3' miRNA: 3'- cUGCUGCUGCUGcUGCUG--------------UUUUAGcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 87811 | 0.69 | 0.992612 |
Target: 5'- uGACGAaaucauguuucaucUGGCGAUGaACGACGGAggCGAa -3' miRNA: 3'- -CUGCU--------------GCUGCUGC-UGCUGUUUuaGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 105954 | 1.1 | 0.017363 |
Target: 5'- aGACGACGACGACGACGACAAAAUCGAc -3' miRNA: 3'- -CUGCUGCUGCUGCUGCUGUUUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 117866 | 0.66 | 0.999394 |
Target: 5'- cGACGAgcuCGACGACacCGACAGGGgcagCGGc -3' miRNA: 3'- -CUGCU---GCUGCUGcuGCUGUUUUa---GCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 84314 | 0.67 | 0.999252 |
Target: 5'- uGAUGAUGAUGAUGAUGAUgu-AUCa- -3' miRNA: 3'- -CUGCUGCUGCUGCUGCUGuuuUAGcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 91976 | 0.67 | 0.999252 |
Target: 5'- aGGCGGCGcucaaGCGGCGGacaauacaGACGcAGGUCGAc -3' miRNA: 3'- -CUGCUGC-----UGCUGCUg-------CUGU-UUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 130740 | 0.67 | 0.999083 |
Target: 5'- aGCGAUGACGAUcgaGAUGGguAuGUCGAg -3' miRNA: 3'- cUGCUGCUGCUG---CUGCUguUuUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 48037 | 0.68 | 0.997217 |
Target: 5'- cACGAuCGucccGCGGCGACGcGCGAucGAUCGAu -3' miRNA: 3'- cUGCU-GC----UGCUGCUGC-UGUU--UUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 54912 | 0.69 | 0.9948 |
Target: 5'- gGACGuauuCGACGuaaauggguuuaaaGGCGGCGGAAUCGGa -3' miRNA: 3'- -CUGCu---GCUGCug------------CUGCUGUUUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 37372 | 0.68 | 0.997217 |
Target: 5'- -uCGcCGGUGGCGGCGACAAAgaugucGUCGAu -3' miRNA: 3'- cuGCuGCUGCUGCUGCUGUUU------UAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 133755 | 0.68 | 0.998037 |
Target: 5'- aGACGGuCGAgaaugggucauCGACGugGACA---UCGAa -3' miRNA: 3'- -CUGCU-GCU-----------GCUGCugCUGUuuuAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 64690 | 0.66 | 0.999689 |
Target: 5'- -uUGGCGcCGGCGACGGCAGcguacUCGu -3' miRNA: 3'- cuGCUGCuGCUGCUGCUGUUuu---AGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 109019 | 0.69 | 0.996132 |
Target: 5'- -uCGAUGACGAUGAUGAagauugcuuUAAAAUCGc -3' miRNA: 3'- cuGCUGCUGCUGCUGCU---------GUUUUAGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 95487 | 0.66 | 0.999609 |
Target: 5'- -uCGGCGGCaGCGugGAUc-GGUCGAa -3' miRNA: 3'- cuGCUGCUGcUGCugCUGuuUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 100523 | 0.67 | 0.998881 |
Target: 5'- -uUGACcauuuuguauGCGugGACGGCAGGAUCGu -3' miRNA: 3'- cuGCUGc---------UGCugCUGCUGUUUUAGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 97047 | 0.69 | 0.995471 |
Target: 5'- cACGcCGAccuCGGCGAUGgGCAGGAUCGGa -3' miRNA: 3'- cUGCuGCU---GCUGCUGC-UGUUUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 22229 | 0.69 | 0.992921 |
Target: 5'- uGGCGuCGAcacCGACGACGACucgGAGAaCGAa -3' miRNA: 3'- -CUGCuGCU---GCUGCUGCUG---UUUUaGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 41559 | 0.66 | 0.999512 |
Target: 5'- -cCGcCGcCGGCGACGGCAAuAUCu- -3' miRNA: 3'- cuGCuGCuGCUGCUGCUGUUuUAGcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 125014 | 0.67 | 0.999252 |
Target: 5'- aGCu-CGAUGuuCGACGugAAAGUCGAu -3' miRNA: 3'- cUGcuGCUGCu-GCUGCugUUUUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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