miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 200577 0.66 0.986901
Target:  5'- uGGCAAUgaugGCGGuGAUgGUGGCGgCGGAg- -3'
miRNA:   3'- -CCGUUA----CGUC-CUG-CACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 260148 0.66 0.986901
Target:  5'- uGCGAaacgacGCAGGAgGUGGUAaaggCGGugGg -3'
miRNA:   3'- cCGUUa-----CGUCCUgCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188052 0.66 0.986901
Target:  5'- aGGUGAggGUGGcGGCGUgGGCGgCGGugGg -3'
miRNA:   3'- -CCGUUa-CGUC-CUGCA-CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 309901 0.66 0.986901
Target:  5'- nGGUAAUGguGGugGaggagaUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 261862 0.66 0.986901
Target:  5'- -uCGAUGCAGGAacaacGCACCGGcaGCGg -3'
miRNA:   3'- ccGUUACGUCCUgcac-CGUGGCC--UGC- -5'
32775 5' -56.7 NC_007346.1 + 87719 0.66 0.986901
Target:  5'- uGCAGUGCAGaGAUGaUGGaUACUGGGu- -3'
miRNA:   3'- cCGUUACGUC-CUGC-ACC-GUGGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 32376 0.66 0.985369
Target:  5'- uGGUuuugGCGGcGGCGguuuuggugacGGCAUCGGACGu -3'
miRNA:   3'- -CCGuua-CGUC-CUGCa----------CCGUGGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 57493 0.66 0.985369
Target:  5'- uGGCGGUGgagaGGGAgGUGGCGagGGAgGc -3'
miRNA:   3'- -CCGUUACg---UCCUgCACCGUggCCUgC- -5'
32775 5' -56.7 NC_007346.1 + 63492 0.66 0.983703
Target:  5'- uGGCAaugGUGguGGAgGUGGagaUGGugGa -3'
miRNA:   3'- -CCGU---UACguCCUgCACCgugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128455 0.66 0.983703
Target:  5'- uGGCGccugccaccAUGguGGAgGcGGCGgCGGugGa -3'
miRNA:   3'- -CCGU---------UACguCCUgCaCCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 244773 0.66 0.983703
Target:  5'- cGGCGAUGCAGuGGCcauuuagGGaACUGGugGc -3'
miRNA:   3'- -CCGUUACGUC-CUGca-----CCgUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188013 0.66 0.981897
Target:  5'- cGGCGGUGacggGGGugGgGGCGacggCGGAUGa -3'
miRNA:   3'- -CCGUUACg---UCCugCaCCGUg---GCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 128260 0.66 0.981897
Target:  5'- cGGUGAUGguGGugGcggugauggUGGCGgCGG-CGa -3'
miRNA:   3'- -CCGUUACguCCugC---------ACCGUgGCCuGC- -5'
32775 5' -56.7 NC_007346.1 + 189221 0.66 0.979945
Target:  5'- uGGUGAUGgAGGugGcGGCGgugaCGGugGu -3'
miRNA:   3'- -CCGUUACgUCCugCaCCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 144977 0.66 0.979945
Target:  5'- uGGUGAUGCAacGCGUGGUGauucaaCGGAUGg -3'
miRNA:   3'- -CCGUUACGUccUGCACCGUg-----GCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 353137 0.67 0.97784
Target:  5'- cGCAAUGCAcGuGAauCGaUGGCACCcGGugGc -3'
miRNA:   3'- cCGUUACGU-C-CU--GC-ACCGUGG-CCugC- -5'
32775 5' -56.7 NC_007346.1 + 184756 0.67 0.97784
Target:  5'- uGGUGAUGgGGGugGUGGgGagGGugGc -3'
miRNA:   3'- -CCGUUACgUCCugCACCgUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311570 0.67 0.97784
Target:  5'- aGGCAGUgGCGGaGAuUGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUA-CGUC-CU-GCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 71689 0.67 0.97784
Target:  5'- aGGCAuAUGCuGaACGUGGUACauuGGACu -3'
miRNA:   3'- -CCGU-UACGuCcUGCACCGUGg--CCUGc -5'
32775 5' -56.7 NC_007346.1 + 361643 0.67 0.975577
Target:  5'- cGGUAAUGCGGaGAacCGcGGCgguccaugaACCGGAUGu -3'
miRNA:   3'- -CCGUUACGUC-CU--GCaCCG---------UGGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.