miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 38112 0.66 0.987814
Target:  5'- uCUUCGUCGUCACUAgaugCGCCAauuUCa--- -3'
miRNA:   3'- -GAAGCAGCGGUGGUa---GCGGU---AGcggc -5'
32777 5' -56.8 NC_007346.1 + 198574 0.66 0.987814
Target:  5'- -----cCGCCACCAUCacccccaccaCCAUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGc---------GGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198742 0.66 0.987814
Target:  5'- -----cCGCCACCAUCacccccaccaCCAUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGc---------GGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 179821 0.66 0.987814
Target:  5'- -cUCGUCaauuucgaGagGCCAUCGUCAUUGCUGg -3'
miRNA:   3'- gaAGCAG--------CggUGGUAGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 323635 0.66 0.987814
Target:  5'- --gUGUaagUGUC-CCAaCGCCGUCGCCGa -3'
miRNA:   3'- gaaGCA---GCGGuGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 266283 0.66 0.986368
Target:  5'- aUUCugaGCCAUUuUCGCCGUCGUCa -3'
miRNA:   3'- gAAGcagCGGUGGuAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 329764 0.66 0.986368
Target:  5'- -cUCGUCGCCAaCAUCuuccUCAUCGUCu -3'
miRNA:   3'- gaAGCAGCGGUgGUAGc---GGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 270161 0.66 0.984793
Target:  5'- -aUCGUCacguucaCCACCAUCaCCAUcacCGCCGc -3'
miRNA:   3'- gaAGCAGc------GGUGGUAGcGGUA---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 309672 0.66 0.984793
Target:  5'- --cCGcCGCCACCAaCuCCAcCGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 57182 0.66 0.984793
Target:  5'- -----cCGCCAUCAcCGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 128067 0.66 0.983783
Target:  5'- -----cCGCCGCCAUcaaucucaccuucgcCGCCGUCGUCu -3'
miRNA:   3'- gaagcaGCGGUGGUA---------------GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 292155 0.66 0.983083
Target:  5'- ---aGgCGCCACCAUCGCgcUCGgCGg -3'
miRNA:   3'- gaagCaGCGGUGGUAGCGguAGCgGC- -5'
32777 5' -56.8 NC_007346.1 + 309369 0.66 0.983083
Target:  5'- ----aUCGCCACCAcC-CCAUUGCCu -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309972 0.66 0.983083
Target:  5'- --cCGUcucCGCCACCucccucuacAUCGCCAUCcCCa -3'
miRNA:   3'- gaaGCA---GCGGUGG---------UAGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 238501 0.66 0.983083
Target:  5'- gUUCaUCGCCGCCAUCaGCUcgcaucaucccaGUCGUCc -3'
miRNA:   3'- gAAGcAGCGGUGGUAG-CGG------------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 188953 0.66 0.981232
Target:  5'- -----cCGCCACCAUcacCGCCAccuccaUCGCCu -3'
miRNA:   3'- gaagcaGCGGUGGUA---GCGGU------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 310026 0.66 0.981232
Target:  5'- --cCGUCaccacccCCACCAUcCGCC-UCGCCa -3'
miRNA:   3'- gaaGCAGc------GGUGGUA-GCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309566 0.66 0.981232
Target:  5'- -aUUGcCGCCACCAccaUUGCCuccacCGCCa -3'
miRNA:   3'- gaAGCaGCGGUGGU---AGCGGua---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 306803 0.66 0.981232
Target:  5'- ----aUCGCCACCAcCaCCAUUGCCu -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 274755 0.66 0.979233
Target:  5'- --aUGUCuGCCGCCAcgcucagccgUCGugcCCGUCGCCa -3'
miRNA:   3'- gaaGCAG-CGGUGGU----------AGC---GGUAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.