miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 309396 0.67 0.97229
Target:  5'- --cCGgUGCCuCCAUCGCCAUuaccacCGCCa -3'
miRNA:   3'- gaaGCaGCGGuGGUAGCGGUA------GCGGc -5'
32777 5' -56.8 NC_007346.1 + 309369 0.66 0.983083
Target:  5'- ----aUCGCCACCAcC-CCAUUGCCu -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309313 0.69 0.923055
Target:  5'- --cCGUCGCCGCCAccaaGuCCAcCGCCa -3'
miRNA:   3'- gaaGCAGCGGUGGUag--C-GGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309277 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 308240 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 307973 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 307700 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 307439 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 307167 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 306957 0.67 0.97229
Target:  5'- -----cCGCCGCCAUCuCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 306872 0.67 0.969642
Target:  5'- -aUCucCGCCGCCAUCuCCAcCGCCa -3'
miRNA:   3'- gaAGcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 306803 0.66 0.981232
Target:  5'- ----aUCGCCACCAcCaCCAUUGCCu -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 306747 0.68 0.95367
Target:  5'- --cCGUCGCCGCCGccaaGuCCAcCGCCa -3'
miRNA:   3'- gaaGCAGCGGUGGUag--C-GGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 306711 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 304708 0.71 0.85504
Target:  5'- aUUC-UCGCCACCGaCGCUGcCGCCGu -3'
miRNA:   3'- gAAGcAGCGGUGGUaGCGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 292155 0.66 0.983083
Target:  5'- ---aGgCGCCACCAUCGCgcUCGgCGg -3'
miRNA:   3'- gaagCaGCGGUGGUAGCGguAGCgGC- -5'
32777 5' -56.8 NC_007346.1 + 274755 0.66 0.979233
Target:  5'- --aUGUCuGCCGCCAcgcucagccgUCGugcCCGUCGCCa -3'
miRNA:   3'- gaaGCAG-CGGUGGU----------AGC---GGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 274105 0.69 0.937396
Target:  5'- aUUCGcCGCCuCCGaaUCGCCGaaauugCGCCGc -3'
miRNA:   3'- gAAGCaGCGGuGGU--AGCGGUa-----GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 273046 0.69 0.932821
Target:  5'- -gUCGUCGCCGaaacacaCGUCGCCA-C-CCGa -3'
miRNA:   3'- gaAGCAGCGGUg------GUAGCGGUaGcGGC- -5'
32777 5' -56.8 NC_007346.1 + 272017 0.7 0.900477
Target:  5'- -gUCGUguaccacCGCCACCAcCGCCAccucCGCCa -3'
miRNA:   3'- gaAGCA-------GCGGUGGUaGCGGUa---GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.