miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32782 3' -54.4 NC_007346.1 + 189543 0.66 0.9955
Target:  5'- -aGGGCGGCgGuGGA-GAUGGCG-GCg -3'
miRNA:   3'- uaCCUGCUGaC-CCUaCUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 184761 0.66 0.994813
Target:  5'- gGUGGugGugaugGGGGUGGUGGgGAGg- -3'
miRNA:   3'- -UACCugCuga--CCCUACUACUgCUCga -5'
32782 3' -54.4 NC_007346.1 + 198137 0.66 0.994044
Target:  5'- -gGGGCGAUgguggugGGGGUGAUGGUG-GCg -3'
miRNA:   3'- uaCCUGCUGa------CCCUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 258089 0.66 0.994044
Target:  5'- -cGaGGCGGCcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uaC-CUGCUGa-----CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 198666 0.66 0.994044
Target:  5'- gAUGGugG-CgggGGuGAUGGUGGCGGGg- -3'
miRNA:   3'- -UACCugCuGa--CC-CUACUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 86937 0.66 0.994044
Target:  5'- ---aGCGACUGGGA--GUGGCGcAGCg -3'
miRNA:   3'- uaccUGCUGACCCUacUACUGC-UCGa -5'
32782 3' -54.4 NC_007346.1 + 198305 0.66 0.994044
Target:  5'- -gGGGCGAUgguggugGGGGUGAUGGUG-GCg -3'
miRNA:   3'- uaCCUGCUGa------CCCUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 128643 0.66 0.993962
Target:  5'- gGUGGugGAUuuggugaUGGuGGUGAUGGCG-GUg -3'
miRNA:   3'- -UACCugCUG-------ACC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 307598 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 309930 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308405 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308132 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 307871 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 128598 0.66 0.993185
Target:  5'- gGUGGugGAggcGGuGGUGGUGACG-GCg -3'
miRNA:   3'- -UACCugCUga-CC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308671 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 188884 0.66 0.99223
Target:  5'- gAUGGugGuGgUGGuGAUGGUGGCGguGGCg -3'
miRNA:   3'- -UACCugC-UgACC-CUACUACUGC--UCGa -5'
32782 3' -54.4 NC_007346.1 + 308935 0.66 0.99223
Target:  5'- -gGGGCGAgggGGGGUGGgggcgGugGAGUa -3'
miRNA:   3'- uaCCUGCUga-CCCUACUa----CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 49990 0.67 0.990002
Target:  5'- gGUGGugGcgaUGGuGGUGGUGGCGAugGCg -3'
miRNA:   3'- -UACCugCug-ACC-CUACUACUGCU--CGa -5'
32782 3' -54.4 NC_007346.1 + 57431 0.67 0.990002
Target:  5'- uUGGGCGGCgGGGGaaAUGGCG-GCg -3'
miRNA:   3'- uACCUGCUGaCCCUacUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 35743 0.67 0.990002
Target:  5'- -gGGuaguaACGGCUGGGGUGGUGGaaucagGAGUa -3'
miRNA:   3'- uaCC-----UGCUGACCCUACUACUg-----CUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.