miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 306270 0.66 0.996694
Target:  5'- -gUGGUggaGGAGAUGGUGGCgGUGgUa- -3'
miRNA:   3'- gaACCG---UUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 86732 0.66 0.996694
Target:  5'- --cGGCGGAGGguGCGGCCAaUGgUCu -3'
miRNA:   3'- gaaCCGUUUCUacCGCCGGU-ACgAGc -5'
32784 5' -54 NC_007346.1 + 61191 0.66 0.996487
Target:  5'- --aGGCGGAGGUGGC-GCCGgugauggcgguggGCUgGg -3'
miRNA:   3'- gaaCCGUUUCUACCGcCGGUa------------CGAgC- -5'
32784 5' -54 NC_007346.1 + 107043 0.66 0.996156
Target:  5'- -aUGGCAGGGAgagauaGGCGGgCuuuUGUUUGa -3'
miRNA:   3'- gaACCGUUUCUa-----CCGCCgGu--ACGAGC- -5'
32784 5' -54 NC_007346.1 + 181836 0.66 0.996156
Target:  5'- --cGGCGGuGGUGGUGGCgGUGg-CGg -3'
miRNA:   3'- gaaCCGUUuCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 60336 0.66 0.996156
Target:  5'- -aUGGCGAuGGUGGUGGUgAUGgUgGu -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 307657 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 307987 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 308191 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 308464 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 310016 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 198083 0.66 0.994864
Target:  5'- -gUGGCGGuGAUGGUGGUgGUGg-CGg -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 198251 0.66 0.994864
Target:  5'- -gUGGCGGuGAUGGUGGUgGUGg-CGg -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 311527 0.66 0.994864
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGUUgGu -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGAgC- -5'
32784 5' -54 NC_007346.1 + 311488 0.66 0.994864
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGUUgGu -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGAgC- -5'
32784 5' -54 NC_007346.1 + 274533 0.66 0.994864
Target:  5'- --cGGCGAuucGGA-GGCGGCgaAUGCaUCGa -3'
miRNA:   3'- gaaCCGUU---UCUaCCGCCGg-UACG-AGC- -5'
32784 5' -54 NC_007346.1 + 135301 0.66 0.994097
Target:  5'- -gUGGUGAAGugcuuUGGUGGCuCGcGCUCa -3'
miRNA:   3'- gaACCGUUUCu----ACCGCCG-GUaCGAGc -5'
32784 5' -54 NC_007346.1 + 178723 0.67 0.99324
Target:  5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 178669 0.67 0.99324
Target:  5'- -gUGGCGGAGAUGGgGGUaacgGCg-- -3'
miRNA:   3'- gaACCGUUUCUACCgCCGgua-CGagc -5'
32784 5' -54 NC_007346.1 + 311376 0.67 0.99324
Target:  5'- --cGGCAGAGAaGGCGGCg--GCgaCGg -3'
miRNA:   3'- gaaCCGUUUCUaCCGCCGguaCGa-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.