miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32795 5' -44.6 NC_007346.1 + 187284 0.66 1
Target:  5'- gGUGGCgGAGcCAcugcgggagguguuGGUGCAuuUGCACa -3'
miRNA:   3'- -CAUUGgCUUuGU--------------UCACGUuuACGUGc -5'
32795 5' -44.6 NC_007346.1 + 104288 0.67 1
Target:  5'- -aAAgCGuacauGCAGGUGUAGAUGUACu -3'
miRNA:   3'- caUUgGCuu---UGUUCACGUUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 365222 0.69 1
Target:  5'- uGUAugUGAua-AAGUGCGAggGCACc -3'
miRNA:   3'- -CAUugGCUuugUUCACGUUuaCGUGc -5'
32795 5' -44.6 NC_007346.1 + 157323 0.69 1
Target:  5'- --uGCCGAAaucgaucGCAAG-GCAuAUGCugGg -3'
miRNA:   3'- cauUGGCUU-------UGUUCaCGUuUACGugC- -5'
32795 5' -44.6 NC_007346.1 + 205180 0.69 1
Target:  5'- -cAACCGAugUAuGUGguGAUGUACGu -3'
miRNA:   3'- caUUGGCUuuGUuCACguUUACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 22817 0.69 1
Target:  5'- uUGAUUGAAu--GGUGCGAAUcGCGCGg -3'
miRNA:   3'- cAUUGGCUUuguUCACGUUUA-CGUGC- -5'
32795 5' -44.6 NC_007346.1 + 45239 0.69 1
Target:  5'- uGUGAUaCGAugcGACAuGUGCAAAUGCAa- -3'
miRNA:   3'- -CAUUG-GCU---UUGUuCACGUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 69753 0.69 1
Target:  5'- uGUGACgugGAAAC-AGUGCAAAUGcCAUGu -3'
miRNA:   3'- -CAUUGg--CUUUGuUCACGUUUAC-GUGC- -5'
32795 5' -44.6 NC_007346.1 + 67858 0.69 1
Target:  5'- -gAAUUGAuauGCAAGUGCGGGUGUAa- -3'
miRNA:   3'- caUUGGCUu--UGUUCACGUUUACGUgc -5'
32795 5' -44.6 NC_007346.1 + 384740 0.67 1
Target:  5'- -aAACCGAcuCAc-UGCAAGUGCAaCGg -3'
miRNA:   3'- caUUGGCUuuGUucACGUUUACGU-GC- -5'
32795 5' -44.6 NC_007346.1 + 388874 0.67 1
Target:  5'- cUAGCUGggGCAuuUGCAcuGUGUAUGg -3'
miRNA:   3'- cAUUGGCuuUGUucACGUu-UACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 99080 0.67 1
Target:  5'- uUAAUCGAAGCGAaUGCAGAgauuguUGCAUu -3'
miRNA:   3'- cAUUGGCUUUGUUcACGUUU------ACGUGc -5'
32795 5' -44.6 NC_007346.1 + 97966 0.66 1
Target:  5'- --cGCCGAAAUAucgaAGcGCGGAUGC-CGg -3'
miRNA:   3'- cauUGGCUUUGU----UCaCGUUUACGuGC- -5'
32795 5' -44.6 NC_007346.1 + 223884 0.66 1
Target:  5'- -aAAUCGuauuGGCAAGUGCcgccAAGUGCAUu -3'
miRNA:   3'- caUUGGCu---UUGUUCACG----UUUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 95420 0.67 1
Target:  5'- -aGACUGAAACAuuguGUGCA-AUGUAUu -3'
miRNA:   3'- caUUGGCUUUGUu---CACGUuUACGUGc -5'
32795 5' -44.6 NC_007346.1 + 275322 0.67 1
Target:  5'- ---uCCGAAAacauGGUGCGGAugucggcguguUGCACGg -3'
miRNA:   3'- cauuGGCUUUgu--UCACGUUU-----------ACGUGC- -5'
32795 5' -44.6 NC_007346.1 + 3320 0.67 1
Target:  5'- ---uCCGAGACAgAGUacucuGCAAAUGUugGu -3'
miRNA:   3'- cauuGGCUUUGU-UCA-----CGUUUACGugC- -5'
32795 5' -44.6 NC_007346.1 + 296497 0.67 1
Target:  5'- -cAACCGAuguuGGUGCAAagGCAUu -3'
miRNA:   3'- caUUGGCUuuguUCACGUUuaCGUGc -5'
32795 5' -44.6 NC_007346.1 + 254148 0.67 1
Target:  5'- --cACCGAGACGc-UGCAAcaGCACGu -3'
miRNA:   3'- cauUGGCUUUGUucACGUUuaCGUGC- -5'
32795 5' -44.6 NC_007346.1 + 255259 0.67 1
Target:  5'- --cACCGAGACGc-UGCAAcaGCACGu -3'
miRNA:   3'- cauUGGCUUUGUucACGUUuaCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.