miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32799 3' -56.3 NC_007346.1 + 311489 0.66 0.989752
Target:  5'- aAUGGCGGUGGAgaugGCGGUggaguugguggaggaGGCaCCGGUg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCG---------------CUG-GGUCG- -5'
32799 3' -56.3 NC_007346.1 + 116372 0.66 0.989255
Target:  5'- uGCGGUGGUAcaagcGUugGGCGAUgCAu- -3'
miRNA:   3'- gUGCCGCCGUu----UAugCCGCUGgGUcg -5'
32799 3' -56.3 NC_007346.1 + 266618 0.66 0.987929
Target:  5'- --aGGCagaaugcaGGC-AGUGUGGCGGCUCGGCa -3'
miRNA:   3'- gugCCG--------CCGuUUAUGCCGCUGGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 171887 0.66 0.987929
Target:  5'- aCACGGCGGguAcGUG-GGCGACU--GCg -3'
miRNA:   3'- -GUGCCGCCguU-UAUgCCGCUGGguCG- -5'
32799 3' -56.3 NC_007346.1 + 364665 0.66 0.987507
Target:  5'- aUAUGGCGGCcGAUcGCGGUgcuuuuaucugucaGAgCCAGUc -3'
miRNA:   3'- -GUGCCGCCGuUUA-UGCCG--------------CUgGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 309975 0.66 0.98648
Target:  5'- aAUGGUGGUGGAgaugGCGGUgggGGCaCCGGUg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCG---CUG-GGUCG- -5'
32799 3' -56.3 NC_007346.1 + 246754 0.66 0.98648
Target:  5'- gAUGGCgcucGGUAAGUggAUGGUGcGCCCGGUg -3'
miRNA:   3'- gUGCCG----CCGUUUA--UGCCGC-UGGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 59727 0.66 0.984901
Target:  5'- gGCGGCGGCGGuggugAUGGUGGCgguGGUg -3'
miRNA:   3'- gUGCCGCCGUUua---UGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 167295 0.66 0.984901
Target:  5'- uGCcGCGGCAgGAUAUGGUGAUCaGGUa -3'
miRNA:   3'- gUGcCGCCGU-UUAUGCCGCUGGgUCG- -5'
32799 3' -56.3 NC_007346.1 + 272472 0.66 0.984901
Target:  5'- gGCGGUGGCGGAggUGGCGGaggUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUauGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 306301 0.66 0.984901
Target:  5'- gGCGGCGGUGGAauUGGUGGCggCGGUa -3'
miRNA:   3'- gUGCCGCCGUUUauGCCGCUGg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 260062 0.66 0.984901
Target:  5'- -uUGGCGGCA--UGCGuGCGACaaguGCa -3'
miRNA:   3'- guGCCGCCGUuuAUGC-CGCUGggu-CG- -5'
32799 3' -56.3 NC_007346.1 + 63455 0.66 0.984901
Target:  5'- gAUGGUGGCAAggAUGGUGGCaauGGUg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 137622 0.66 0.984901
Target:  5'- -cCGGCGGCGuuuAAUACGGUacACUCAccGCa -3'
miRNA:   3'- guGCCGCCGU---UUAUGCCGc-UGGGU--CG- -5'
32799 3' -56.3 NC_007346.1 + 240223 0.66 0.984901
Target:  5'- -uCGGCaGCAAGUACcGCGcaauCCaCAGCa -3'
miRNA:   3'- guGCCGcCGUUUAUGcCGCu---GG-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 244747 0.66 0.984735
Target:  5'- -cUGGUGGCGAGUugGugaguugacugauGUGACCgAGUg -3'
miRNA:   3'- guGCCGCCGUUUAugC-------------CGCUGGgUCG- -5'
32799 3' -56.3 NC_007346.1 + 98700 0.66 0.9844
Target:  5'- -cCGGCGGCGccUGCGagcccguucuugacGUGGCCCAccGCg -3'
miRNA:   3'- guGCCGCCGUuuAUGC--------------CGCUGGGU--CG- -5'
32799 3' -56.3 NC_007346.1 + 308228 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 308501 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 308800 0.66 0.983185
Target:  5'- gAUGGCGGUGGAgaugGCGGUGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.