miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32813 3' -43.2 NC_007346.1 + 249312 0.66 1
Target:  5'- -uUCAAGUugAUUAACGacgugucaccggguuUCGUCGACa -3'
miRNA:   3'- cuAGUUUAugUAGUUGU---------------GGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 139645 0.68 1
Target:  5'- --cCAAGUACAaUAACACCGaCGAUUg -3'
miRNA:   3'- cuaGUUUAUGUaGUUGUGGCaGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 48047 0.68 1
Target:  5'- cGUCGAAUGCAUCcacGACACgcaCGUCcACUu -3'
miRNA:   3'- cUAGUUUAUGUAG---UUGUG---GCAGuUGA- -5'
32813 3' -43.2 NC_007346.1 + 293393 0.69 1
Target:  5'- cGUCAGAUGaugaGACGCCGUCAGu- -3'
miRNA:   3'- cUAGUUUAUguagUUGUGGCAGUUga -5'
32813 3' -43.2 NC_007346.1 + 205437 0.67 1
Target:  5'- -uUCAAGUGCAUCGAU--UGUCAugUc -3'
miRNA:   3'- cuAGUUUAUGUAGUUGugGCAGUugA- -5'
32813 3' -43.2 NC_007346.1 + 350394 0.68 1
Target:  5'- uGUCAAAaucUGCAUCcACuuccguaucaaaACCGUCAACa -3'
miRNA:   3'- cUAGUUU---AUGUAGuUG------------UGGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 300242 0.69 1
Target:  5'- --cCGAAUGCAUCuacGGCAUCGcCAACa -3'
miRNA:   3'- cuaGUUUAUGUAG---UUGUGGCaGUUGa -5'
32813 3' -43.2 NC_007346.1 + 167147 0.68 1
Target:  5'- --aUAAAUGCAUCGAUGCCGcCAuauACUc -3'
miRNA:   3'- cuaGUUUAUGUAGUUGUGGCaGU---UGA- -5'
32813 3' -43.2 NC_007346.1 + 175853 0.68 1
Target:  5'- --aCAAAUACAUCAACAUgGUUugguguACUu -3'
miRNA:   3'- cuaGUUUAUGUAGUUGUGgCAGu-----UGA- -5'
32813 3' -43.2 NC_007346.1 + 371129 0.67 1
Target:  5'- uAUCGGGUGCA---ACuCCGUCGGCUg -3'
miRNA:   3'- cUAGUUUAUGUaguUGuGGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 233911 0.68 1
Target:  5'- uGAUCGAGUGCAUCAguuGgUGUCAugUu -3'
miRNA:   3'- -CUAGUUUAUGUAGUug-UgGCAGUugA- -5'
32813 3' -43.2 NC_007346.1 + 212412 0.66 1
Target:  5'- uGGUCAugu-UAUCGACugUGUUGACUg -3'
miRNA:   3'- -CUAGUuuauGUAGUUGugGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 336975 0.66 1
Target:  5'- cGAUCAAAUGCAUUAcuaucauuugauuucACACgCGUCc--- -3'
miRNA:   3'- -CUAGUUUAUGUAGU---------------UGUG-GCAGuuga -5'
32813 3' -43.2 NC_007346.1 + 192952 0.66 1
Target:  5'- -cUCuAAUAUAUU--UACCGUCAACUg -3'
miRNA:   3'- cuAGuUUAUGUAGuuGUGGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 153793 0.66 1
Target:  5'- aAUCAGGaGCAUCugcuGCACaGUCGGCa -3'
miRNA:   3'- cUAGUUUaUGUAGu---UGUGgCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 202974 0.67 1
Target:  5'- uAUCAGAUGCGUCAucagggcagucggucACAuCCGuaaUCGACUc -3'
miRNA:   3'- cUAGUUUAUGUAGU---------------UGU-GGC---AGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 9344 0.68 1
Target:  5'- ---gAAAUACAUCAGaACCGUCAu-- -3'
miRNA:   3'- cuagUUUAUGUAGUUgUGGCAGUuga -5'
32813 3' -43.2 NC_007346.1 + 31100 0.68 1
Target:  5'- aGAUCAAuUACAUgGGCAUgGUCAc-- -3'
miRNA:   3'- -CUAGUUuAUGUAgUUGUGgCAGUuga -5'
32813 3' -43.2 NC_007346.1 + 11204 0.68 1
Target:  5'- -uUCGGGUAUAUUaaaaGAUGCCGUCGAUa -3'
miRNA:   3'- cuAGUUUAUGUAG----UUGUGGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 218220 0.68 1
Target:  5'- --cCGAGUGCAUCGGCACCaaucauaaaaGUCAu-- -3'
miRNA:   3'- cuaGUUUAUGUAGUUGUGG----------CAGUuga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.