miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32827 3' -57 NC_007346.1 + 189392 0.66 0.983134
Target:  5'- aGGAGGCGAuggaggugGCG-GUGauGGUGGCGGUGg -3'
miRNA:   3'- gCUUCCGCU--------CGCgUAC--CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 58145 0.66 0.983134
Target:  5'- aCGGAGGUGGGgGagaugGUGGGgGA-GAUGg -3'
miRNA:   3'- -GCUUCCGCUCgCg----UACCCgCUgCUAC- -5'
32827 3' -57 NC_007346.1 + 308869 0.66 0.983134
Target:  5'- gGAgcAGGCGGGgGUggaGUuGGUGGCGGUGg -3'
miRNA:   3'- gCU--UCCGCUCgCG---UAcCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 128593 0.66 0.981278
Target:  5'- uGGAGGCG-GUG-GUGGuGaCGGCGGUGg -3'
miRNA:   3'- gCUUCCGCuCGCgUACC-C-GCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310721 0.66 0.981278
Target:  5'- -cGGGGUG-GCGCAgGcGGUGugGGUGg -3'
miRNA:   3'- gcUUCCGCuCGCGUaC-CCGCugCUAC- -5'
32827 3' -57 NC_007346.1 + 198830 0.66 0.979066
Target:  5'- aGAuGGUG-GCGguUGagauggcGGCGGCGAUGg -3'
miRNA:   3'- gCUuCCGCuCGCguAC-------CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188831 0.66 0.977116
Target:  5'- uGGAGGCGA-CGgugGaGGUGACGGUGg -3'
miRNA:   3'- gCUUCCGCUcGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 314702 0.66 0.977116
Target:  5'- uGggGGUG-GCGgugGUGGG-GGCGGUGg -3'
miRNA:   3'- gCuuCCGCuCGCg--UACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 274531 0.66 0.977116
Target:  5'- aCGggGGUGAcggacgcgacggGCaGCAUGGGCaccGCGAg- -3'
miRNA:   3'- -GCuuCCGCU------------CG-CGUACCCGc--UGCUac -5'
32827 3' -57 NC_007346.1 + 58044 0.66 0.974796
Target:  5'- aGGAGGUgGAGCGgGUGGuggguucgguGaCGGCGGUGg -3'
miRNA:   3'- gCUUCCG-CUCGCgUACC----------C-GCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 272465 0.66 0.974796
Target:  5'- gCGGAGGUG-GCGgA--GGUGGCGGUGg -3'
miRNA:   3'- -GCUUCCGCuCGCgUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 309712 0.67 0.97231
Target:  5'- aGgcGGCGGGCucgGCGgcgGcGGCGACGGc- -3'
miRNA:   3'- gCuuCCGCUCG---CGUa--C-CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 197895 0.67 0.969651
Target:  5'- uGGAGGCGAuggugGCGau--GGUGGCGGUGg -3'
miRNA:   3'- gCUUCCGCU-----CGCguacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198778 0.67 0.966815
Target:  5'- gCGggGGUGAugGUG-GUGGG-GGCGAUGg -3'
miRNA:   3'- -GCuuCCGCU--CGCgUACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310261 0.67 0.963797
Target:  5'- uGgcGGCG-GCGgAUuuGGCGGCGGUGg -3'
miRNA:   3'- gCuuCCGCuCGCgUAc-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 184783 0.67 0.960591
Target:  5'- uGggGGUG-GUGgGgaGGGUGGCGGUGg -3'
miRNA:   3'- gCuuCCGCuCGCgUa-CCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 184750 0.67 0.960591
Target:  5'- uGggGGUG-GUGgGgaGGGUGGCGGUGg -3'
miRNA:   3'- gCuuCCGCuCGCgUa-CCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310465 0.67 0.957196
Target:  5'- aGAuGGCGAgGCGgAUGguggggguGGUGACGGUGa -3'
miRNA:   3'- gCUuCCGCU-CGCgUAC--------CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 50012 0.67 0.957196
Target:  5'- gCGAuGGCGAG-GCGgauUGuGGCGACGcUGg -3'
miRNA:   3'- -GCUuCCGCUCgCGU---AC-CCGCUGCuAC- -5'
32827 3' -57 NC_007346.1 + 306048 0.67 0.957196
Target:  5'- gGGAGGCGgaAGgGgGUGGacGUGGCGGUGg -3'
miRNA:   3'- gCUUCCGC--UCgCgUACC--CGCUGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.