miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 311510 0.66 0.999999
Target:  5'- gGUGGAGuugguGGAgGCGgUAAUGGCGGUg -3'
miRNA:   3'- -CACUUUu----UUUgUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 202377 0.66 0.999999
Target:  5'- aUGAGAuuGAACACAuccuucCCGACacuGGUGGCa -3'
miRNA:   3'- cACUUUu-UUUGUGU------GGUUG---CCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 58162 0.66 0.999999
Target:  5'- gGUGggGGAGAU-----GGCGGCGGCg -3'
miRNA:   3'- -CACuuUUUUUGuguggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 240962 0.66 0.999999
Target:  5'- -cGAGAuuucacuaauuAAGACACucgACUuuaaGACGGCGGCa -3'
miRNA:   3'- caCUUU-----------UUUUGUG---UGG----UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 134798 0.66 0.999999
Target:  5'- aUGAGAgcaGAAAgGCGgCGAagaaGGCGGCa -3'
miRNA:   3'- cACUUU---UUUUgUGUgGUUg---CCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 371059 0.66 0.999999
Target:  5'- uUGGAGAGAaccaucuccauuaGCAUACCAAUGGUcaugcgugaugggauGGCa -3'
miRNA:   3'- cACUUUUUU-------------UGUGUGGUUGCCG---------------CCGa -5'
32831 5' -47.8 NC_007346.1 + 372489 0.66 0.999999
Target:  5'- uUGGAuGAAGCAUACguGgucCGGCGGUg -3'
miRNA:   3'- cACUUuUUUUGUGUGguU---GCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 309888 0.66 0.999999
Target:  5'- -gGAGGAGAugGCGgUggaGAUGGCGGUg -3'
miRNA:   3'- caCUUUUUUugUGUgG---UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 270703 0.66 0.999999
Target:  5'- uUGGAGgugcGAAugGCGgCAAUGGUGGUg -3'
miRNA:   3'- cACUUU----UUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 197635 0.66 0.999998
Target:  5'- uGUGAugguGGugGCGauGGCGGCGGCg -3'
miRNA:   3'- -CACUuuu-UUugUGUggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 165591 0.66 0.999997
Target:  5'- gGUGGcgacGAAGGugGCGgCGAUGGUGGUg -3'
miRNA:   3'- -CACU----UUUUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 239573 0.66 0.999997
Target:  5'- uUGAGcaacuuGGAUGCaACCGcgGCGGCGGCg -3'
miRNA:   3'- cACUUuu----UUUGUG-UGGU--UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 163880 0.67 0.999995
Target:  5'- -aGAAGAAGagcaauugucaucGCAUguuGCUgaAGCGGCGGCUg -3'
miRNA:   3'- caCUUUUUU-------------UGUG---UGG--UUGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 310275 0.67 0.999995
Target:  5'- gGUGguGGGGGCAa--UGGCGGCGGCg -3'
miRNA:   3'- -CACuuUUUUUGUgugGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 320258 0.67 0.999993
Target:  5'- aGUGAaugacGAAGAACucCAUgAAUGGUGGCa -3'
miRNA:   3'- -CACU-----UUUUUUGu-GUGgUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 137141 0.67 0.999991
Target:  5'- -aGAAGuaccAUAUACCGACGGCacaGGCg -3'
miRNA:   3'- caCUUUuuu-UGUGUGGUUGCCG---CCGa -5'
32831 5' -47.8 NC_007346.1 + 188000 0.67 0.999991
Target:  5'- gGUGggGGcGACGgcggaugaGgCGACGGCGGCg -3'
miRNA:   3'- -CACuuUUuUUGUg-------UgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 189448 0.67 0.999991
Target:  5'- gGUGAcgguGGugGCGgCGACGGUGGUg -3'
miRNA:   3'- -CACUuuu-UUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 57440 0.67 0.999987
Target:  5'- -gGggGAAAugGCGgCGgcaauaACGGCGGUg -3'
miRNA:   3'- caCuuUUUUugUGUgGU------UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 349793 0.67 0.999987
Target:  5'- ------cGGugGCGgCGGCGGCGGCg -3'
miRNA:   3'- cacuuuuUUugUGUgGUUGCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.