miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32835 5' -56 NC_007346.1 + 198796 0.66 0.986707
Target:  5'- -aCCAUCGCCUCCACC---ACCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 180380 0.66 0.986707
Target:  5'- -aUCACCcCUUCCACCCcAACCAu-- -3'
miRNA:   3'- acGGUGGuGGAGGUGGGcUUGGUuua -5'
32835 5' -56 NC_007346.1 + 308305 0.66 0.986707
Target:  5'- -aCCGCCAUCUCCACC---ACCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 127771 0.66 0.986707
Target:  5'- cGCCACCGCCgUCACC---GCCAu-- -3'
miRNA:   3'- aCGGUGGUGGaGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 310250 0.66 0.986707
Target:  5'- -aCCGCCAUCUCCACC---ACCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 307504 0.66 0.986707
Target:  5'- -aCCGCCAUCUCCACC---ACCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 128228 0.66 0.986707
Target:  5'- -uCCACCACCUUCugCUucACCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGugGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 127686 0.66 0.986707
Target:  5'- -uCCACCACCaagUCCGCCUccACCAu-- -3'
miRNA:   3'- acGGUGGUGG---AGGUGGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 199069 0.66 0.986707
Target:  5'- -cCCACCACCaUCACCCccACCAc-- -3'
miRNA:   3'- acGGUGGUGGaGGUGGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 199138 0.66 0.986707
Target:  5'- -aCCAUCGCCUCCACC---ACCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 50421 0.66 0.986707
Target:  5'- cGCCACCACCaccaucgCCACCacca-CAAGUg -3'
miRNA:   3'- aCGGUGGUGGa------GGUGGgcuugGUUUA- -5'
32835 5' -56 NC_007346.1 + 198959 0.66 0.986707
Target:  5'- cGCCAUCACCcCCACC---ACCAu-- -3'
miRNA:   3'- aCGGUGGUGGaGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 234562 0.66 0.986707
Target:  5'- --aCACUACCUCCACCUG--UCGAAa -3'
miRNA:   3'- acgGUGGUGGAGGUGGGCuuGGUUUa -5'
32835 5' -56 NC_007346.1 + 392508 0.66 0.986707
Target:  5'- aGCCAgUCGCCgagCCAguCgCCGAGCCAGu- -3'
miRNA:   3'- aCGGU-GGUGGa--GGU--G-GGCUUGGUUua -5'
32835 5' -56 NC_007346.1 + 271999 0.66 0.98512
Target:  5'- cGCCACCAUCUaCCACaaguCGuguACCAc-- -3'
miRNA:   3'- aCGGUGGUGGA-GGUGg---GCu--UGGUuua -5'
32835 5' -56 NC_007346.1 + 401145 0.66 0.98512
Target:  5'- cGCCGCUcaACaaCCACCUGcacGGCCAGAUa -3'
miRNA:   3'- aCGGUGG--UGgaGGUGGGC---UUGGUUUA- -5'
32835 5' -56 NC_007346.1 + 162395 0.66 0.98512
Target:  5'- -aCCGCCACUUCCAaaUGAAgCAAGUa -3'
miRNA:   3'- acGGUGGUGGAGGUggGCUUgGUUUA- -5'
32835 5' -56 NC_007346.1 + 87154 0.66 0.98512
Target:  5'- gGCCGCaC-CCUCCgccGCCC-AACCGAGc -3'
miRNA:   3'- aCGGUG-GuGGAGG---UGGGcUUGGUUUa -5'
32835 5' -56 NC_007346.1 + 174753 0.66 0.983392
Target:  5'- aGCCAauaCugCUCaUACUCGGACCAc-- -3'
miRNA:   3'- aCGGUg--GugGAG-GUGGGCUUGGUuua -5'
32835 5' -56 NC_007346.1 + 67092 0.66 0.983392
Target:  5'- aUGCUcCCACCUCCugCaauuuccaAACCAAAa -3'
miRNA:   3'- -ACGGuGGUGGAGGugGgc------UUGGUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.