miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 180725 0.66 0.998701
Target:  5'- gUGAUGG-AGGUGuaccCGGUGGAaaugGCGGUg -3'
miRNA:   3'- -AUUAUCuUCCGCc---GCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 63484 0.66 0.998701
Target:  5'- gUGGUGG-AGGUGGagauGGUGGAggcaaggaugGUGGCa -3'
miRNA:   3'- -AUUAUCuUCCGCCg---CUACCUa---------CGCCG- -5'
32840 3' -53 NC_007346.1 + 128159 0.66 0.998701
Target:  5'- uUGGUGG-AGGCGGacuuGGUGGAgacggacuugGUGGUg -3'
miRNA:   3'- -AUUAUCuUCCGCCg---CUACCUa---------CGCCG- -5'
32840 3' -53 NC_007346.1 + 239551 0.66 0.998451
Target:  5'- ----cGgcGGCGGCGGUGaugGUGGUc -3'
miRNA:   3'- auuauCuuCCGCCGCUACcuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 128054 0.66 0.998451
Target:  5'- gUAAUGGcgGAGGacuuGGCGGUGGAggacuUGGCg -3'
miRNA:   3'- -AUUAUC--UUCCg---CCGCUACCUac---GCCG- -5'
32840 3' -53 NC_007346.1 + 177830 0.66 0.998451
Target:  5'- gUGAUAGugcGGGUgcgGGCGca-GGUGCGGCu -3'
miRNA:   3'- -AUUAUCu--UCCG---CCGCuacCUACGCCG- -5'
32840 3' -53 NC_007346.1 + 256011 0.66 0.99816
Target:  5'- ---gAGGAGGCGGUGcgcGAUGCGa- -3'
miRNA:   3'- auuaUCUUCCGCCGCuacCUACGCcg -5'
32840 3' -53 NC_007346.1 + 63528 0.66 0.99816
Target:  5'- aGAUGGugGAGGUGGagauGGUGGAggcaaggaugGUGGCa -3'
miRNA:   3'- aUUAUC--UUCCGCCg---CUACCUa---------CGCCG- -5'
32840 3' -53 NC_007346.1 + 135128 0.66 0.99816
Target:  5'- ----cGccGGUGGCGGUGGAU-CGGa -3'
miRNA:   3'- auuauCuuCCGCCGCUACCUAcGCCg -5'
32840 3' -53 NC_007346.1 + 56767 0.66 0.997825
Target:  5'- gUGAUGGcgGAGGUGGUGAUGG---UGGUg -3'
miRNA:   3'- -AUUAUC--UUCCGCCGCUACCuacGCCG- -5'
32840 3' -53 NC_007346.1 + 59305 0.66 0.997825
Target:  5'- nUGGUA-AAGGCGGCGGaGGugaagGUGGUg -3'
miRNA:   3'- -AUUAUcUUCCGCCGCUaCCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 50029 0.66 0.997825
Target:  5'- -uGUGGcgacgcuGGUGGCGGUGGGUacGCaaGGCa -3'
miRNA:   3'- auUAUCuu-----CCGCCGCUACCUA--CG--CCG- -5'
32840 3' -53 NC_007346.1 + 306098 0.66 0.997825
Target:  5'- gAGU-GAAGGgGGUGGUGGAgaCGGg -3'
miRNA:   3'- aUUAuCUUCCgCCGCUACCUacGCCg -5'
32840 3' -53 NC_007346.1 + 180773 0.66 0.997825
Target:  5'- uUGGUGGc-GGUGGUGAUGGugaaaGUGaCGGUg -3'
miRNA:   3'- -AUUAUCuuCCGCCGCUACC-----UAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 311576 0.66 0.997825
Target:  5'- cGGU-GAAGGCaGUGgcGGAgauUGUGGCg -3'
miRNA:   3'- aUUAuCUUCCGcCGCuaCCU---ACGCCG- -5'
32840 3' -53 NC_007346.1 + 305130 0.66 0.997825
Target:  5'- ----cGucGGUGGCGAgaauUGCGGCg -3'
miRNA:   3'- auuauCuuCCGCCGCUaccuACGCCG- -5'
32840 3' -53 NC_007346.1 + 169835 0.66 0.99744
Target:  5'- aGAUGGAAGaGaUGGUGGUGaGAUGgUGGUg -3'
miRNA:   3'- aUUAUCUUC-C-GCCGCUAC-CUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 61235 0.66 0.99744
Target:  5'- gUGAUGG-AGGUGGaGGUGGAggugaugGUGGUu -3'
miRNA:   3'- -AUUAUCuUCCGCCgCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 138089 0.66 0.997
Target:  5'- --cUGGGcguucacucGGGCGGCGgcGGcgGUGGg -3'
miRNA:   3'- auuAUCU---------UCCGCCGCuaCCuaCGCCg -5'
32840 3' -53 NC_007346.1 + 189285 0.66 0.996905
Target:  5'- gUGAUGGugguGGUGGUGAUGGugguggagaugGUGGUg -3'
miRNA:   3'- -AUUAUCuu--CCGCCGCUACCua---------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.