Results 1 - 20 of 253 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32840 | 3' | -53 | NC_007346.1 | + | 32375 | 0.68 | 0.988173 |
Target: 5'- gUGGUuuuGgcGGCGGCGGUuuuGGUGaCGGCa -3' miRNA: 3'- -AUUAu--CuuCCGCCGCUAc--CUAC-GCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 49987 | 0.75 | 0.838677 |
Target: 5'- -uGUGGu-GGUGGCGAUGGuggugGUGGCg -3' miRNA: 3'- auUAUCuuCCGCCGCUACCua---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 50029 | 0.66 | 0.997825 |
Target: 5'- -uGUGGcgacgcuGGUGGCGGUGGGUacGCaaGGCa -3' miRNA: 3'- auUAUCuu-----CCGCCGCUACCUA--CG--CCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 56680 | 0.72 | 0.939625 |
Target: 5'- ---cAGgcGGUGGUGGUGGAgcaggaucagGCGGUg -3' miRNA: 3'- auuaUCuuCCGCCGCUACCUa---------CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 56734 | 0.71 | 0.952329 |
Target: 5'- gUGGUAGcaauGGCGGgGAugcUGGcgGUGGCg -3' miRNA: 3'- -AUUAUCuu--CCGCCgCU---ACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 56767 | 0.66 | 0.997825 |
Target: 5'- gUGAUGGcgGAGGUGGUGAUGG---UGGUg -3' miRNA: 3'- -AUUAUC--UUCCGCCGCUACCuacGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 56794 | 0.71 | 0.951147 |
Target: 5'- aUGGUGGAAguggugguucugauGGCGGUGGUGGAgccGcCGGUg -3' miRNA: 3'- -AUUAUCUU--------------CCGCCGCUACCUa--C-GCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 57420 | 0.81 | 0.527655 |
Target: 5'- aUGGUGGugaauuGGGCGGCGggGGAaaugGCGGCg -3' miRNA: 3'- -AUUAUCu-----UCCGCCGCuaCCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 57477 | 0.72 | 0.934948 |
Target: 5'- aUGGUGGAGGuuGCaauGGCGGUGGAgagggagGUGGCg -3' miRNA: 3'- -AUUAUCUUC--CG---CCGCUACCUa------CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 57516 | 0.88 | 0.241847 |
Target: 5'- ---aGGGAGGCGGCGAUGGAgGCGGa -3' miRNA: 3'- auuaUCUUCCGCCGCUACCUaCGCCg -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 58017 | 0.71 | 0.948313 |
Target: 5'- aAAUGGAA-GCGGCGGUGGAggaGaCGGa -3' miRNA: 3'- aUUAUCUUcCGCCGCUACCUa--C-GCCg -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 58047 | 0.69 | 0.98331 |
Target: 5'- aGGUGGAgcGGGUGGUGGguucGGUGaCGGCg -3' miRNA: 3'- aUUAUCU--UCCGCCGCUac--CUAC-GCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 58103 | 0.76 | 0.77928 |
Target: 5'- ---aAGGAGGUGGCGAuaaugguggaggUGGAgucgGUGGCg -3' miRNA: 3'- auuaUCUUCCGCCGCU------------ACCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 58158 | 0.72 | 0.919577 |
Target: 5'- aGAUGGu-GGgGGaGAUGGcgGCGGCg -3' miRNA: 3'- aUUAUCuuCCgCCgCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 58793 | 0.76 | 0.758312 |
Target: 5'- cUGGUGGAGGGgaugguggcggauaUGGCGAUGGAggcaaugGCGGUg -3' miRNA: 3'- -AUUAUCUUCC--------------GCCGCUACCUa------CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 59275 | 0.79 | 0.635306 |
Target: 5'- gUGGUGGAGaauuuGGCGGCGGUGGugGCGGUg -3' miRNA: 3'- -AUUAUCUU-----CCGCCGCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 59305 | 0.66 | 0.997825 |
Target: 5'- nUGGUA-AAGGCGGCGGaGGugaagGUGGUg -3' miRNA: 3'- -AUUAUcUUCCGCCGCUaCCua---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 59707 | 0.9 | 0.186065 |
Target: 5'- aUGAUGGAggAGGUGGUGAUGGcgGCGGCg -3' miRNA: 3'- -AUUAUCU--UCCGCCGCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 59750 | 0.79 | 0.605603 |
Target: 5'- cGGUGGugauGGUGGUGAUGGggGUGGCg -3' miRNA: 3'- aUUAUCuu--CCGCCGCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 60289 | 0.75 | 0.82248 |
Target: 5'- ----cGGAGGUgauGGCGGUGGAgGCGGUg -3' miRNA: 3'- auuauCUUCCG---CCGCUACCUaCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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