miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33031 3' -50.4 NC_007497.1 + 38319 0.66 0.896839
Target:  5'- aGCaCGGCaacgaugucguACAGUUgaUCGccguAGCGAAuGCGCa -3'
miRNA:   3'- -CG-GCCG-----------UGUCAA--AGU----UCGCUUuCGUG- -5'
33031 3' -50.4 NC_007497.1 + 19914 0.66 0.896839
Target:  5'- uGCCGGUuuccauCAGgcgUCGuaauGCGAAGGCc- -3'
miRNA:   3'- -CGGCCGu-----GUCaa-AGUu---CGCUUUCGug -5'
33031 3' -50.4 NC_007497.1 + 30422 0.66 0.896839
Target:  5'- cGCCGGCGCAcg--CuGGCG-AAGUAUc -3'
miRNA:   3'- -CGGCCGUGUcaaaGuUCGCuUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 34752 0.66 0.896839
Target:  5'- cGCCGaGCGCgaAGUagCGAucGCGAcgcAGGCGCg -3'
miRNA:   3'- -CGGC-CGUG--UCAaaGUU--CGCU---UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 16832 0.66 0.892321
Target:  5'- cGCCGGCGCGGgugcggggcucuUUUCGuuguGGgGAGucaugcugccuccguAGCGCg -3'
miRNA:   3'- -CGGCCGUGUC------------AAAGU----UCgCUU---------------UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 35040 0.66 0.88925
Target:  5'- aGCUGGCcgAGgcgCGAGCGAuugAAGCAa -3'
miRNA:   3'- -CGGCCGugUCaaaGUUCGCU---UUCGUg -5'
33031 3' -50.4 NC_007497.1 + 44625 0.66 0.881368
Target:  5'- uGCCGGCGauCAGUcUCAgcAGCc--GGCGCc -3'
miRNA:   3'- -CGGCCGU--GUCAaAGU--UCGcuuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 4002 0.66 0.881368
Target:  5'- cGCCGGCACGaagaacgUCGGGac--GGCACg -3'
miRNA:   3'- -CGGCCGUGUcaa----AGUUCgcuuUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 3784 0.66 0.881368
Target:  5'- gGCCGGCGCGaugaaCAAGacCGAGcAGCGCu -3'
miRNA:   3'- -CGGCCGUGUcaaa-GUUC--GCUU-UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 17191 0.66 0.873196
Target:  5'- gGCgCGGCACAucucaaaagUCGGuGCGAcAGGCACa -3'
miRNA:   3'- -CG-GCCGUGUcaa------AGUU-CGCU-UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 8752 0.66 0.873196
Target:  5'- aCCGGCGCAGg--CAAGCugugccgacGAcGGCGa -3'
miRNA:   3'- cGGCCGUGUCaaaGUUCG---------CUuUCGUg -5'
33031 3' -50.4 NC_007497.1 + 18513 0.66 0.864744
Target:  5'- gGCCGGCccgACGaUUcgCGAGCGGgucgAGGCGCu -3'
miRNA:   3'- -CGGCCG---UGUcAAa-GUUCGCU----UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 2552 0.66 0.864744
Target:  5'- cGCCGGCggccGCGGcg-CAuccuuGCGAuuuccGAGCGCg -3'
miRNA:   3'- -CGGCCG----UGUCaaaGUu----CGCU-----UUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 27336 0.67 0.856019
Target:  5'- uCgGGUGCAcGUcgCAGGCGcAGGCACa -3'
miRNA:   3'- cGgCCGUGU-CAaaGUUCGCuUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 23866 0.67 0.856019
Target:  5'- cGCgCGGCACuca-UCcGGCGuGAAGCGCu -3'
miRNA:   3'- -CG-GCCGUGucaaAGuUCGC-UUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 3206 0.67 0.84703
Target:  5'- gGCCGGCGCcGUc-CGAGCGcGAGaCAg -3'
miRNA:   3'- -CGGCCGUGuCAaaGUUCGCuUUC-GUg -5'
33031 3' -50.4 NC_007497.1 + 21563 0.67 0.837787
Target:  5'- cGUgGGCGCAGcucgUCGacGGCGucuuGGCGCu -3'
miRNA:   3'- -CGgCCGUGUCaa--AGU--UCGCuu--UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 43086 0.67 0.828301
Target:  5'- cGCCGGCGCAaucUCuuuGCGGcgcuccAGCACg -3'
miRNA:   3'- -CGGCCGUGUcaaAGuu-CGCUu-----UCGUG- -5'
33031 3' -50.4 NC_007497.1 + 37981 0.67 0.818583
Target:  5'- gGCCGGCguucgACGcGUcgaucgcUCAGGcCGAGGGCGCa -3'
miRNA:   3'- -CGGCCG-----UGU-CAa------AGUUC-GCUUUCGUG- -5'
33031 3' -50.4 NC_007497.1 + 26992 0.68 0.812645
Target:  5'- uCCGGCGCGGUauggaugcuggaAAGCGAu-GCGCu -3'
miRNA:   3'- cGGCCGUGUCAaag---------UUCGCUuuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.