miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33046 3' -53.3 NC_007497.1 + 16271 0.66 0.774653
Target:  5'- -gGCCgGCGCGcuccGUUCAACaGCGgcGCACc -3'
miRNA:   3'- cgCGG-UGCGC----CAAGUUG-CGUuuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 30100 0.66 0.774653
Target:  5'- gGUGCgaACGcCGGUUCGGCGUGAAuaACc -3'
miRNA:   3'- -CGCGg-UGC-GCCAAGUUGCGUUUcgUG- -5'
33046 3' -53.3 NC_007497.1 + 2443 0.66 0.774653
Target:  5'- uGCGCCgcugggcguucGCGCGG--CGACGCGccaucacGCGCa -3'
miRNA:   3'- -CGCGG-----------UGCGCCaaGUUGCGUuu-----CGUG- -5'
33046 3' -53.3 NC_007497.1 + 33194 0.66 0.774653
Target:  5'- -gGCCGCGCGaaUCGACGCcuGAuCGCg -3'
miRNA:   3'- cgCGGUGCGCcaAGUUGCGu-UUcGUG- -5'
33046 3' -53.3 NC_007497.1 + 17279 0.66 0.764187
Target:  5'- cUGCCuGCGCGGg-CGGCuGCGGGGCGg -3'
miRNA:   3'- cGCGG-UGCGCCaaGUUG-CGUUUCGUg -5'
33046 3' -53.3 NC_007497.1 + 4572 0.66 0.764187
Target:  5'- aGCGCCGCGUcuugcgUCGAucCGCcGAGCAUc -3'
miRNA:   3'- -CGCGGUGCGcca---AGUU--GCGuUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 16693 0.66 0.764187
Target:  5'- cGCGUCGCGUaGGaaggUCGACGau--GCACu -3'
miRNA:   3'- -CGCGGUGCG-CCa---AGUUGCguuuCGUG- -5'
33046 3' -53.3 NC_007497.1 + 36652 0.66 0.764187
Target:  5'- aCGCCACcccuggGCGGUcUCGACaUAcAGCACg -3'
miRNA:   3'- cGCGGUG------CGCCA-AGUUGcGUuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 2898 0.66 0.753576
Target:  5'- -aGCaugCACGCGGUgcuGGCGCAuGGUGCg -3'
miRNA:   3'- cgCG---GUGCGCCAag-UUGCGUuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 36698 0.66 0.753576
Target:  5'- cGCGCgUACGCGaGcUUguGCGCGucuGCACu -3'
miRNA:   3'- -CGCG-GUGCGC-C-AAguUGCGUuu-CGUG- -5'
33046 3' -53.3 NC_007497.1 + 14562 0.66 0.753576
Target:  5'- cGCGaCUAcuuCGCGGcgaaggUGAUGCAAGGCGCu -3'
miRNA:   3'- -CGC-GGU---GCGCCaa----GUUGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 4209 0.66 0.753576
Target:  5'- gGCGCCAUGCGca-CGAaGCcGAGCAUc -3'
miRNA:   3'- -CGCGGUGCGCcaaGUUgCGuUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 25711 0.66 0.747145
Target:  5'- uGCGCCcguccgaggugauuuGCGUcuugaucuGGUaCGACGCGGAGaCGCg -3'
miRNA:   3'- -CGCGG---------------UGCG--------CCAaGUUGCGUUUC-GUG- -5'
33046 3' -53.3 NC_007497.1 + 26529 0.66 0.742832
Target:  5'- cGCGCaCACGCG---CGACGU--AGCGCc -3'
miRNA:   3'- -CGCG-GUGCGCcaaGUUGCGuuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 11629 0.66 0.731969
Target:  5'- gGCGCCcagcgaugagugGCGUGGUaacUCGuCGCAAccucGCGCg -3'
miRNA:   3'- -CGCGG------------UGCGCCA---AGUuGCGUUu---CGUG- -5'
33046 3' -53.3 NC_007497.1 + 23515 0.66 0.731969
Target:  5'- cCGCCGCGCccagCAGCGCGAccaggagauacGGCAa -3'
miRNA:   3'- cGCGGUGCGccaaGUUGCGUU-----------UCGUg -5'
33046 3' -53.3 NC_007497.1 + 34774 0.66 0.731969
Target:  5'- -gGCCGCgGCGGccucCAACGCGAcGCGu -3'
miRNA:   3'- cgCGGUG-CGCCaa--GUUGCGUUuCGUg -5'
33046 3' -53.3 NC_007497.1 + 29299 0.66 0.731969
Target:  5'- -gGCCguAUGgGGUUCGAUGU--GGCGCg -3'
miRNA:   3'- cgCGG--UGCgCCAAGUUGCGuuUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 43425 0.66 0.720999
Target:  5'- cGUuCCA-GCaGUUCAuCGCGAAGCACc -3'
miRNA:   3'- -CGcGGUgCGcCAAGUuGCGUUUCGUG- -5'
33046 3' -53.3 NC_007497.1 + 40595 0.66 0.720999
Target:  5'- cCGgCGCGCGccaUCGACGCuucgauGAGCGCc -3'
miRNA:   3'- cGCgGUGCGCca-AGUUGCGu-----UUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.