Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33046 | 3' | -53.3 | NC_007497.1 | + | 30100 | 0.66 | 0.774653 |
Target: 5'- gGUGCgaACGcCGGUUCGGCGUGAAuaACc -3' miRNA: 3'- -CGCGg-UGC-GCCAAGUUGCGUUUcgUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 2443 | 0.66 | 0.774653 |
Target: 5'- uGCGCCgcugggcguucGCGCGG--CGACGCGccaucacGCGCa -3' miRNA: 3'- -CGCGG-----------UGCGCCaaGUUGCGUuu-----CGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 33194 | 0.66 | 0.774653 |
Target: 5'- -gGCCGCGCGaaUCGACGCcuGAuCGCg -3' miRNA: 3'- cgCGGUGCGCcaAGUUGCGu-UUcGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 16271 | 0.66 | 0.774653 |
Target: 5'- -gGCCgGCGCGcuccGUUCAACaGCGgcGCACc -3' miRNA: 3'- cgCGG-UGCGC----CAAGUUG-CGUuuCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 17279 | 0.66 | 0.764187 |
Target: 5'- cUGCCuGCGCGGg-CGGCuGCGGGGCGg -3' miRNA: 3'- cGCGG-UGCGCCaaGUUG-CGUUUCGUg -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 16693 | 0.66 | 0.764187 |
Target: 5'- cGCGUCGCGUaGGaaggUCGACGau--GCACu -3' miRNA: 3'- -CGCGGUGCG-CCa---AGUUGCguuuCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 36652 | 0.66 | 0.764187 |
Target: 5'- aCGCCACcccuggGCGGUcUCGACaUAcAGCACg -3' miRNA: 3'- cGCGGUG------CGCCA-AGUUGcGUuUCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 4572 | 0.66 | 0.764187 |
Target: 5'- aGCGCCGCGUcuugcgUCGAucCGCcGAGCAUc -3' miRNA: 3'- -CGCGGUGCGcca---AGUU--GCGuUUCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 36698 | 0.66 | 0.753576 |
Target: 5'- cGCGCgUACGCGaGcUUguGCGCGucuGCACu -3' miRNA: 3'- -CGCG-GUGCGC-C-AAguUGCGUuu-CGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 2898 | 0.66 | 0.753576 |
Target: 5'- -aGCaugCACGCGGUgcuGGCGCAuGGUGCg -3' miRNA: 3'- cgCG---GUGCGCCAag-UUGCGUuUCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 14562 | 0.66 | 0.753576 |
Target: 5'- cGCGaCUAcuuCGCGGcgaaggUGAUGCAAGGCGCu -3' miRNA: 3'- -CGC-GGU---GCGCCaa----GUUGCGUUUCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 4209 | 0.66 | 0.753576 |
Target: 5'- gGCGCCAUGCGca-CGAaGCcGAGCAUc -3' miRNA: 3'- -CGCGGUGCGCcaaGUUgCGuUUCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 25711 | 0.66 | 0.747145 |
Target: 5'- uGCGCCcguccgaggugauuuGCGUcuugaucuGGUaCGACGCGGAGaCGCg -3' miRNA: 3'- -CGCGG---------------UGCG--------CCAaGUUGCGUUUC-GUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 26529 | 0.66 | 0.742832 |
Target: 5'- cGCGCaCACGCG---CGACGU--AGCGCc -3' miRNA: 3'- -CGCG-GUGCGCcaaGUUGCGuuUCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 29299 | 0.66 | 0.731969 |
Target: 5'- -gGCCguAUGgGGUUCGAUGU--GGCGCg -3' miRNA: 3'- cgCGG--UGCgCCAAGUUGCGuuUCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 34774 | 0.66 | 0.731969 |
Target: 5'- -gGCCGCgGCGGccucCAACGCGAcGCGu -3' miRNA: 3'- cgCGGUG-CGCCaa--GUUGCGUUuCGUg -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 23515 | 0.66 | 0.731969 |
Target: 5'- cCGCCGCGCccagCAGCGCGAccaggagauacGGCAa -3' miRNA: 3'- cGCGGUGCGccaaGUUGCGUU-----------UCGUg -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 11629 | 0.66 | 0.731969 |
Target: 5'- gGCGCCcagcgaugagugGCGUGGUaacUCGuCGCAAccucGCGCg -3' miRNA: 3'- -CGCGG------------UGCGCCA---AGUuGCGUUu---CGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 40595 | 0.66 | 0.720999 |
Target: 5'- cCGgCGCGCGccaUCGACGCuucgauGAGCGCc -3' miRNA: 3'- cGCgGUGCGCca-AGUUGCGu-----UUCGUG- -5' |
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33046 | 3' | -53.3 | NC_007497.1 | + | 43425 | 0.66 | 0.720999 |
Target: 5'- cGUuCCA-GCaGUUCAuCGCGAAGCACc -3' miRNA: 3'- -CGcGGUgCGcCAAGUuGCGUUUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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