miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 3' -52.1 NC_007497.1 + 16469 0.66 0.856678
Target:  5'- uGCGUgGAcuGCGGCGGCcugcUCGAagguauccggaugaaUGCCg -3'
miRNA:   3'- gUGUAgCU--UGCCGCCGu---AGCUa--------------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 8482 0.66 0.855817
Target:  5'- cCGCAuuUUGcGCGGCGGC-UCag-UGCCc -3'
miRNA:   3'- -GUGU--AGCuUGCCGCCGuAGcuaACGG- -5'
33051 3' -52.1 NC_007497.1 + 23010 0.66 0.855817
Target:  5'- cCGCAUgCGGG-GGCGGCGaCGAcagcgGCCc -3'
miRNA:   3'- -GUGUA-GCUUgCCGCCGUaGCUaa---CGG- -5'
33051 3' -52.1 NC_007497.1 + 31821 0.66 0.855817
Target:  5'- uGCGgccgGAGCGGCGGCGUccagaagaaCGAgacagaGCCg -3'
miRNA:   3'- gUGUag--CUUGCCGCCGUA---------GCUaa----CGG- -5'
33051 3' -52.1 NC_007497.1 + 42069 0.66 0.855817
Target:  5'- cCACGUUGAcgugaGGCGGCcUU--UUGCCg -3'
miRNA:   3'- -GUGUAGCUug---CCGCCGuAGcuAACGG- -5'
33051 3' -52.1 NC_007497.1 + 36949 0.66 0.855817
Target:  5'- cCGCuggCgGggUGGCGGCA-CGAauucaUGCCg -3'
miRNA:   3'- -GUGua-G-CuuGCCGCCGUaGCUa----ACGG- -5'
33051 3' -52.1 NC_007497.1 + 3795 0.66 0.855817
Target:  5'- gGCGUgaGAAcCGGCGGCGcaUCGAUcccaucgcugaUGUCg -3'
miRNA:   3'- gUGUAg-CUU-GCCGCCGU--AGCUA-----------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 12385 0.66 0.855817
Target:  5'- uCAUGUUGA--GGUGGagGUUGAUUGCCu -3'
miRNA:   3'- -GUGUAGCUugCCGCCg-UAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 32681 0.66 0.854954
Target:  5'- uGCG-CGAGCGGCauuGGCGccuguguUCGGUUGgCu -3'
miRNA:   3'- gUGUaGCUUGCCG---CCGU-------AGCUAACgG- -5'
33051 3' -52.1 NC_007497.1 + 32232 0.66 0.847073
Target:  5'- aCGCGUCGcagauGAUGGCGaGCGcCGAguUUGCg -3'
miRNA:   3'- -GUGUAGC-----UUGCCGC-CGUaGCU--AACGg -5'
33051 3' -52.1 NC_007497.1 + 25254 0.66 0.847073
Target:  5'- aUAUGUCGGGCGGUgagccguucugGGCAUUua-UGCCg -3'
miRNA:   3'- -GUGUAGCUUGCCG-----------CCGUAGcuaACGG- -5'
33051 3' -52.1 NC_007497.1 + 34401 0.66 0.847073
Target:  5'- cCugAUCGAGCGGCGccuGCAugUCGAUc--- -3'
miRNA:   3'- -GugUAGCUUGCCGC---CGU--AGCUAacgg -5'
33051 3' -52.1 NC_007497.1 + 4565 0.66 0.847073
Target:  5'- uGCAaCGAGCGccGCGucuuGCGUCGAUccGCCg -3'
miRNA:   3'- gUGUaGCUUGC--CGC----CGUAGCUAa-CGG- -5'
33051 3' -52.1 NC_007497.1 + 26314 0.66 0.847073
Target:  5'- gGCGUCGucGCGGCucGGCGUCcg--GCUg -3'
miRNA:   3'- gUGUAGCu-UGCCG--CCGUAGcuaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 30776 0.66 0.838089
Target:  5'- gCGCGUCGugucGCGGCGuaGUCGcg-GCg -3'
miRNA:   3'- -GUGUAGCu---UGCCGCcgUAGCuaaCGg -5'
33051 3' -52.1 NC_007497.1 + 23699 0.66 0.838089
Target:  5'- cCGCAgugggucaCGGcCGGCGGCcgCGugcUGCCc -3'
miRNA:   3'- -GUGUa-------GCUuGCCGCCGuaGCua-ACGG- -5'
33051 3' -52.1 NC_007497.1 + 41674 0.66 0.838089
Target:  5'- aCACGagcUgGGGCaGCGGCAUCGAacaGCUc -3'
miRNA:   3'- -GUGU---AgCUUGcCGCCGUAGCUaa-CGG- -5'
33051 3' -52.1 NC_007497.1 + 25576 0.66 0.828874
Target:  5'- gCACAaCGAAUGGCacgauCAUCGAgccGCCg -3'
miRNA:   3'- -GUGUaGCUUGCCGcc---GUAGCUaa-CGG- -5'
33051 3' -52.1 NC_007497.1 + 3360 0.66 0.828874
Target:  5'- gACAUCGAaaccagccguGCGGCGcacugcgcGCGggCGAUaUGCCu -3'
miRNA:   3'- gUGUAGCU----------UGCCGC--------CGUa-GCUA-ACGG- -5'
33051 3' -52.1 NC_007497.1 + 775 0.66 0.819439
Target:  5'- gCGC-UCGAuugcaGCccauGCGGCAUCGAUcacGCCg -3'
miRNA:   3'- -GUGuAGCU-----UGc---CGCCGUAGCUAa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.