miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33055 5' -61.6 NC_007497.1 + 37073 0.66 0.358986
Target:  5'- aGCGGCGcGCcGAagcuuguuccGCC-UCCGGCGcCGCc -3'
miRNA:   3'- -UGUCGCuCGaCU----------CGGcAGGCCGC-GCG- -5'
33055 5' -61.6 NC_007497.1 + 27102 0.66 0.358985
Target:  5'- gGCAGCgGAGCggauacGGCCG-CCGaUGCGCc -3'
miRNA:   3'- -UGUCG-CUCGac----UCGGCaGGCcGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 23563 0.66 0.350734
Target:  5'- gGCGGCGGGCgccgGcGUCGUgcaccugaUCaGCGCGCg -3'
miRNA:   3'- -UGUCGCUCGa---CuCGGCA--------GGcCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 25967 0.66 0.3491
Target:  5'- uCGGCGAccgcaacGCUGuccgcuGCUGUCCagacugaagcgaaGGCGCGUg -3'
miRNA:   3'- uGUCGCU-------CGACu-----CGGCAGG-------------CCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15978 0.66 0.342618
Target:  5'- uCGGCGAGUUcGAuCuCGaUCCGuGCGCGCc -3'
miRNA:   3'- uGUCGCUCGA-CUcG-GC-AGGC-CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 7333 0.66 0.342618
Target:  5'- cGCAGa-GGCUgguuccGAGCCGgguaCCGGgGUGCa -3'
miRNA:   3'- -UGUCgcUCGA------CUCGGCa---GGCCgCGCG- -5'
33055 5' -61.6 NC_007497.1 + 36990 0.66 0.334639
Target:  5'- cCGGCGGcGCcgGAGgCGgaacaagcUUCGGCGCGCc -3'
miRNA:   3'- uGUCGCU-CGa-CUCgGC--------AGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 40572 0.66 0.334639
Target:  5'- cACGGCGca-UGGaCCGggaauacCCGGCGCGCg -3'
miRNA:   3'- -UGUCGCucgACUcGGCa------GGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 8277 0.66 0.334639
Target:  5'- cCAGCGAGgcCUGAGCgaaGUCgCGaucGCGCGUc -3'
miRNA:   3'- uGUCGCUC--GACUCGg--CAG-GC---CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 30106 0.66 0.334639
Target:  5'- uCAGCGGGUgcGAacGCCgGUUCGGCGUGa -3'
miRNA:   3'- uGUCGCUCGa-CU--CGG-CAGGCCGCGCg -5'
33055 5' -61.6 NC_007497.1 + 32341 0.66 0.332272
Target:  5'- aACGGUGGGCUuguuggcggcagcgGuGCUGgugCUGGCGgGCa -3'
miRNA:   3'- -UGUCGCUCGA--------------CuCGGCa--GGCCGCgCG- -5'
33055 5' -61.6 NC_007497.1 + 8694 0.66 0.326796
Target:  5'- -aAGCGGGCgggGcgcgucGGCCGcCCGGuCGUGUg -3'
miRNA:   3'- ugUCGCUCGa--C------UCGGCaGGCC-GCGCG- -5'
33055 5' -61.6 NC_007497.1 + 26982 0.66 0.326796
Target:  5'- -aAGCGuGUc--GCCGUCCaccgacuucacGGCGCGCg -3'
miRNA:   3'- ugUCGCuCGacuCGGCAGG-----------CCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15143 0.66 0.326796
Target:  5'- cGCAGCGgaagGGCUcaGGGCauacaUCCaGCGCGCg -3'
miRNA:   3'- -UGUCGC----UCGA--CUCGgc---AGGcCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 44422 0.66 0.32447
Target:  5'- aACAGCGugacgaAGCUGcgaagaaggcggcaAGCCGguuugcUCCGGCG-GCa -3'
miRNA:   3'- -UGUCGC------UCGAC--------------UCGGC------AGGCCGCgCG- -5'
33055 5' -61.6 NC_007497.1 + 12884 0.66 0.31909
Target:  5'- uGCAGUuacGGGCUauuuaGAGCCGccgcgCCGGCuugagGCGCc -3'
miRNA:   3'- -UGUCG---CUCGA-----CUCGGCa----GGCCG-----CGCG- -5'
33055 5' -61.6 NC_007497.1 + 40877 0.67 0.304091
Target:  5'- uGCAGCGAcGCUccGCCGUUCGaUGCGg -3'
miRNA:   3'- -UGUCGCU-CGAcuCGGCAGGCcGCGCg -5'
33055 5' -61.6 NC_007497.1 + 28103 0.67 0.289639
Target:  5'- cCGGCuGGCUGGuGCgCGUgCGGCGCa- -3'
miRNA:   3'- uGUCGcUCGACU-CG-GCAgGCCGCGcg -5'
33055 5' -61.6 NC_007497.1 + 23653 0.67 0.289639
Target:  5'- aACGGCGAGCUGAGgagcgcgcaCUGUgCGaGCGgGg -3'
miRNA:   3'- -UGUCGCUCGACUC---------GGCAgGC-CGCgCg -5'
33055 5' -61.6 NC_007497.1 + 30020 0.67 0.289638
Target:  5'- gGCAGCGGGUUauucacGCCGaaCCGGCGUucGCa -3'
miRNA:   3'- -UGUCGCUCGAcu----CGGCa-GGCCGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.