miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33063 3' -60.2 NC_007497.1 + 44397 0.66 0.406082
Target:  5'- --gGCGGCaaGCCGguuugcuccgGCGGcACCGcCGCg -3'
miRNA:   3'- uuaCGCCGg-CGGCa---------CGUC-UGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 23132 0.66 0.406082
Target:  5'- -cUGCuGGCCGgCGaUGCGGGCacgGUCaGCg -3'
miRNA:   3'- uuACG-CCGGCgGC-ACGUCUGg--CAG-CG- -5'
33063 3' -60.2 NC_007497.1 + 8533 0.66 0.406082
Target:  5'- aAAUGCGGCugauCGUCGgcUGCGGAacuccagUGUCGCg -3'
miRNA:   3'- -UUACGCCG----GCGGC--ACGUCUg------GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 42820 0.66 0.406082
Target:  5'- -cUGCcccgacGCCGCCGcgaUGCGGcguuCCGUCGUc -3'
miRNA:   3'- uuACGc-----CGGCGGC---ACGUCu---GGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 23367 0.66 0.403342
Target:  5'- cGUGCuGCCGCUGgcagccUGCAGcagcgugucgaccaGCuCGUCGCa -3'
miRNA:   3'- uUACGcCGGCGGC------ACGUC--------------UG-GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 28931 0.66 0.400615
Target:  5'- --aGCacuGGCCGUCGUcggcuucguguuugaGCA-ACCGUCGCu -3'
miRNA:   3'- uuaCG---CCGGCGGCA---------------CGUcUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 29266 0.66 0.396997
Target:  5'- --gGCGGCCGUacaUGUGaugcgcgaaCAuGCCGUCGCc -3'
miRNA:   3'- uuaCGCCGGCG---GCAC---------GUcUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 20241 0.66 0.396997
Target:  5'- --aGCaGGCCGCUGgcaGCAGugCGgaUCGg -3'
miRNA:   3'- uuaCG-CCGGCGGCa--CGUCugGC--AGCg -5'
33063 3' -60.2 NC_007497.1 + 11756 0.66 0.387157
Target:  5'- --cGCGcGCCcggcuacucccgGCCGUGCcgguuccGGGCCG-CGCg -3'
miRNA:   3'- uuaCGC-CGG------------CGGCACG-------UCUGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 37044 0.66 0.361996
Target:  5'- --gGC-GCCGCCG-GCGGGCUGaucacugCGCg -3'
miRNA:   3'- uuaCGcCGGCGGCaCGUCUGGCa------GCG- -5'
33063 3' -60.2 NC_007497.1 + 14517 0.66 0.361996
Target:  5'- cAUGUGGCCgggaauGCCGgGCc-GCCGUCGUu -3'
miRNA:   3'- uUACGCCGG------CGGCaCGucUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 16347 0.67 0.345318
Target:  5'- cGGUGC-GCCGCUGUugaacggagcgcGCcGGCCGUCGg -3'
miRNA:   3'- -UUACGcCGGCGGCA------------CGuCUGGCAGCg -5'
33063 3' -60.2 NC_007497.1 + 34922 0.67 0.345318
Target:  5'- -cUGU--UCGCCGauucgaGCGGGCCGUCGCg -3'
miRNA:   3'- uuACGccGGCGGCa-----CGUCUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 23194 0.67 0.345318
Target:  5'- --cGCGGCCGagcaCGUcggcaaGCAGAUcgagggCGUCGCc -3'
miRNA:   3'- uuaCGCCGGCg---GCA------CGUCUG------GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 1980 0.67 0.337188
Target:  5'- cGUGCaGCUGCC-UGCGGGCCG--GCa -3'
miRNA:   3'- uUACGcCGGCGGcACGUCUGGCagCG- -5'
33063 3' -60.2 NC_007497.1 + 25371 0.67 0.337188
Target:  5'- -uUGCuGGCCuucagauuuuuGaCgGUGCAGGCCGUCuGCu -3'
miRNA:   3'- uuACG-CCGG-----------C-GgCACGUCUGGCAG-CG- -5'
33063 3' -60.2 NC_007497.1 + 20419 0.67 0.336382
Target:  5'- uGAUGUGG-CGCUGguggaaUGCAGACaguccuuCGUCGCg -3'
miRNA:   3'- -UUACGCCgGCGGC------ACGUCUG-------GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 42763 0.67 0.326829
Target:  5'- cAGUGguUGGCCGCCGUGauacaacgccccguCAGGggcuUCGUCGCc -3'
miRNA:   3'- -UUAC--GCCGGCGGCAC--------------GUCU----GGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 26775 0.67 0.320572
Target:  5'- ---cCGGCCGCUGcugaaucUGCGcGCCGUCGUc -3'
miRNA:   3'- uuacGCCGGCGGC-------ACGUcUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 40750 0.67 0.313641
Target:  5'- --gGCGGCgGCCGUcucuuccgagauGCcGGCCcGUUGCg -3'
miRNA:   3'- uuaCGCCGgCGGCA------------CGuCUGG-CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.