miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33065 3' -62.2 NC_007497.1 + 40587 0.66 0.379884
Target:  5'- gCCGGGCGCUaccGCCG-GAa-ACGCCAc -3'
miRNA:   3'- -GGCCUGCGGcu-CGGCgCUgcUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 6342 0.66 0.379884
Target:  5'- cCCaGGugGUagCGAGUCGC--UGGCGCCAc -3'
miRNA:   3'- -GG-CCugCG--GCUCGGCGcuGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 20290 0.66 0.371496
Target:  5'- aUGGGCGaCCGAGCa-CGAcaugcagcuCGACGCUAc -3'
miRNA:   3'- gGCCUGC-GGCUCGgcGCU---------GCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 167 0.66 0.363235
Target:  5'- aCUGGuuGuuGugaAGgCGCGACGACGCaCAa -3'
miRNA:   3'- -GGCCugCggC---UCgGCGCUGCUGCG-GU- -5'
33065 3' -62.2 NC_007497.1 + 7172 0.66 0.363235
Target:  5'- gCUGGA-GCCGAGCaaCGCGAagaucaGguGCGCCGg -3'
miRNA:   3'- -GGCCUgCGGCUCG--GCGCUg-----C--UGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 40242 0.66 0.363235
Target:  5'- gUCGGACGUCGGcagacCCGCcuucACGGCGUCGa -3'
miRNA:   3'- -GGCCUGCGGCUc----GGCGc---UGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 36989 0.66 0.363235
Target:  5'- gCCGGcgGCGCCGgaggcggaacaAGCUuCGGCG-CGCCGc -3'
miRNA:   3'- -GGCC--UGCGGC-----------UCGGcGCUGCuGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 38837 0.66 0.363235
Target:  5'- gUCGcGGCGUCGAGCaacaucuGC-ACGACGUCAu -3'
miRNA:   3'- -GGC-CUGCGGCUCGg------CGcUGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 33157 0.66 0.355103
Target:  5'- --cGACGCCGAGCUGgcCGACuACGCg- -3'
miRNA:   3'- ggcCUGCGGCUCGGC--GCUGcUGCGgu -5'
33065 3' -62.2 NC_007497.1 + 13489 0.66 0.355103
Target:  5'- -aGGAUGUCGAGCagaGgGAuuuCGGCGUCAu -3'
miRNA:   3'- ggCCUGCGGCUCGg--CgCU---GCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 3404 0.66 0.347099
Target:  5'- cCUGGAgCGCCGcacGCCGaugGACGGCGaUCAg -3'
miRNA:   3'- -GGCCU-GCGGCu--CGGCg--CUGCUGC-GGU- -5'
33065 3' -62.2 NC_007497.1 + 2843 0.66 0.339226
Target:  5'- aCCGGaACGCuCGGGCUGgccaucCGACGGagucgGCCAu -3'
miRNA:   3'- -GGCC-UGCG-GCUCGGC------GCUGCUg----CGGU- -5'
33065 3' -62.2 NC_007497.1 + 41070 0.66 0.339226
Target:  5'- gCGcGCGCCGAuGuuGCGAa-GCGCCGc -3'
miRNA:   3'- gGCcUGCGGCU-CggCGCUgcUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 33180 0.67 0.331482
Target:  5'- aCGGcGCGaUCGuaGGCCGCGcgaauCGACGCCu -3'
miRNA:   3'- gGCC-UGC-GGC--UCGGCGCu----GCUGCGGu -5'
33065 3' -62.2 NC_007497.1 + 32530 0.67 0.331482
Target:  5'- gCCaGucCGCCGAGaaGCGACGACGa-- -3'
miRNA:   3'- -GGcCu-GCGGCUCggCGCUGCUGCggu -5'
33065 3' -62.2 NC_007497.1 + 35008 0.67 0.331482
Target:  5'- gCGGuCGCaCaGGUCGCGACGGC-CCGc -3'
miRNA:   3'- gGCCuGCG-GcUCGGCGCUGCUGcGGU- -5'
33065 3' -62.2 NC_007497.1 + 32835 0.67 0.331482
Target:  5'- -aGGAgucCGCCGAgaacGCCGCugGGCG-CGCCGa -3'
miRNA:   3'- ggCCU---GCGGCU----CGGCG--CUGCuGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 36513 0.67 0.32387
Target:  5'- -aGGACgcuuGCCGAGCUGCGcgcGCaGAUGUCGg -3'
miRNA:   3'- ggCCUG----CGGCUCGGCGC---UG-CUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 34664 0.67 0.32387
Target:  5'- aCGGAgcgUGCCGcGGUCGCGcaaACGGCgGCCGc -3'
miRNA:   3'- gGCCU---GCGGC-UCGGCGC---UGCUG-CGGU- -5'
33065 3' -62.2 NC_007497.1 + 23430 0.67 0.32387
Target:  5'- aCCGccuuCGCCuGGGCCugaGCGGCGGcCGCCu -3'
miRNA:   3'- -GGCcu--GCGG-CUCGG---CGCUGCU-GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.