miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33068 5' -48.6 NC_007497.1 + 36036 0.66 0.964016
Target:  5'- gGAUaCGCgGAAG-CcgCGGCCGC-GGCg -3'
miRNA:   3'- -CUA-GUGgCUUUaGuaGCUGGCGuUCG- -5'
33068 5' -48.6 NC_007497.1 + 11050 0.66 0.964016
Target:  5'- aGAUCACCGGAuu--UCGcCUGCGcgaaaGGCu -3'
miRNA:   3'- -CUAGUGGCUUuaguAGCuGGCGU-----UCG- -5'
33068 5' -48.6 NC_007497.1 + 27572 0.66 0.964016
Target:  5'- --aCACCuuGAAcgCGUCGGCCGCc--- -3'
miRNA:   3'- cuaGUGG--CUUuaGUAGCUGGCGuucg -5'
33068 5' -48.6 NC_007497.1 + 39191 0.66 0.964016
Target:  5'- -uUCAUCGcGcgCAUCGGCUccggauucaGCAGGCc -3'
miRNA:   3'- cuAGUGGCuUuaGUAGCUGG---------CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 41752 0.66 0.964016
Target:  5'- aGAUCgagaACCGAAAUCAccagaUCGAagaggUCGCGcGCa -3'
miRNA:   3'- -CUAG----UGGCUUUAGU-----AGCU-----GGCGUuCG- -5'
33068 5' -48.6 NC_007497.1 + 22783 0.66 0.963635
Target:  5'- ---uGCgGAAAUgGUCGGCUGCAcgucguuAGCu -3'
miRNA:   3'- cuagUGgCUUUAgUAGCUGGCGU-------UCG- -5'
33068 5' -48.6 NC_007497.1 + 43766 0.66 0.960077
Target:  5'- --aUACCGu-GUCAgugUCGGCCGCAAc- -3'
miRNA:   3'- cuaGUGGCuuUAGU---AGCUGGCGUUcg -5'
33068 5' -48.6 NC_007497.1 + 42366 0.66 0.959667
Target:  5'- cGAUCggcaugcuGCCGAugaaccuGAUCAguagCGACgacaGCAAGCa -3'
miRNA:   3'- -CUAG--------UGGCU-------UUAGUa---GCUGg---CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 38595 0.66 0.955849
Target:  5'- -cUC-CCGGAAugauUCGaugCGGCCGCAacAGCg -3'
miRNA:   3'- cuAGuGGCUUU----AGUa--GCUGGCGU--UCG- -5'
33068 5' -48.6 NC_007497.1 + 5815 0.66 0.955849
Target:  5'- aGUCcgcCCGGcagcuUCGUCGGCUGaCGAGCg -3'
miRNA:   3'- cUAGu--GGCUuu---AGUAGCUGGC-GUUCG- -5'
33068 5' -48.6 NC_007497.1 + 18428 0.66 0.955849
Target:  5'- aGUCACCGAGuAUCugcccucaaGACCGCccccacuAGCg -3'
miRNA:   3'- cUAGUGGCUU-UAGuag------CUGGCGu------UCG- -5'
33068 5' -48.6 NC_007497.1 + 13196 0.66 0.955849
Target:  5'- -cUCAUCGucgucuacAUCAUCG-CgGCGAGCg -3'
miRNA:   3'- cuAGUGGCuu------UAGUAGCuGgCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 7676 0.66 0.955849
Target:  5'- --gCugCGAAuUCGUCGAugcagcCCGCA-GCg -3'
miRNA:   3'- cuaGugGCUUuAGUAGCU------GGCGUuCG- -5'
33068 5' -48.6 NC_007497.1 + 35462 0.66 0.955849
Target:  5'- ---gACCGAGAUCGUCGcguaCGUuggucGAGCg -3'
miRNA:   3'- cuagUGGCUUUAGUAGCug--GCG-----UUCG- -5'
33068 5' -48.6 NC_007497.1 + 1529 0.66 0.951328
Target:  5'- cGGUCACCGAaucgcgaugacgGAUCGcCGAUaugaGCAaaGGCu -3'
miRNA:   3'- -CUAGUGGCU------------UUAGUaGCUGg---CGU--UCG- -5'
33068 5' -48.6 NC_007497.1 + 10655 0.66 0.946507
Target:  5'- -cUC-CCGAaaauGAUCG-CGGCCGCGAucGCa -3'
miRNA:   3'- cuAGuGGCU----UUAGUaGCUGGCGUU--CG- -5'
33068 5' -48.6 NC_007497.1 + 13369 0.66 0.946507
Target:  5'- -uUCACCGAAAaggaUGagGACCGCGaaAGCu -3'
miRNA:   3'- cuAGUGGCUUUa---GUagCUGGCGU--UCG- -5'
33068 5' -48.6 NC_007497.1 + 44215 0.66 0.946507
Target:  5'- --gCGgCGGAAUgAUCGACuCGCGcGCa -3'
miRNA:   3'- cuaGUgGCUUUAgUAGCUG-GCGUuCG- -5'
33068 5' -48.6 NC_007497.1 + 19001 0.66 0.946507
Target:  5'- cGUCACCGAAcUUcgCG-CCGCucucgAAGCc -3'
miRNA:   3'- cUAGUGGCUUuAGuaGCuGGCG-----UUCG- -5'
33068 5' -48.6 NC_007497.1 + 5113 0.66 0.946507
Target:  5'- -cUCGCUGAGcaaccgaCGUgGACCGuCGAGCa -3'
miRNA:   3'- cuAGUGGCUUua-----GUAgCUGGC-GUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.