miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33070 3' -51.3 NC_007497.1 + 2874 0.66 0.879157
Target:  5'- -gGuGCGGAuauGGGCcucGGgGAGCGGCCGa -3'
miRNA:   3'- agCuCGUCUu--UUCG---CUgCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 21028 0.66 0.879157
Target:  5'- cUGcAGCAGAcgauGAGCGA-GcGCGGCCGc -3'
miRNA:   3'- aGC-UCGUCUu---UUCGCUgCuUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 33446 0.66 0.871878
Target:  5'- cCGAGcCGGAAAgcaGGCGucugcucgagaacauCGAGCAGCgGa -3'
miRNA:   3'- aGCUC-GUCUUU---UCGCu--------------GCUUGUCGgC- -5'
33070 3' -51.3 NC_007497.1 + 30214 0.66 0.871055
Target:  5'- aUCGAGC-----GGCGACG-ACAGCg- -3'
miRNA:   3'- -AGCUCGucuuuUCGCUGCuUGUCGgc -5'
33070 3' -51.3 NC_007497.1 + 27695 0.66 0.862684
Target:  5'- gUCGGaCGGAAAAgGCGGCGucgAGCCGc -3'
miRNA:   3'- -AGCUcGUCUUUU-CGCUGCuugUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 26092 0.66 0.862684
Target:  5'- gCGAcGCGGAAGAGUacGCGGGCGacGCCa -3'
miRNA:   3'- aGCU-CGUCUUUUCGc-UGCUUGU--CGGc -5'
33070 3' -51.3 NC_007497.1 + 21547 0.66 0.862684
Target:  5'- cCGGcuGCGGcAGAGGCGugGGcGCAGCuCGu -3'
miRNA:   3'- aGCU--CGUC-UUUUCGCugCU-UGUCG-GC- -5'
33070 3' -51.3 NC_007497.1 + 18530 0.66 0.854927
Target:  5'- gCGAGCGGGucGAGGCGcuugagccgcuuaucCGugccGCAGCCGa -3'
miRNA:   3'- aGCUCGUCU--UUUCGCu--------------GCu---UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 43350 0.66 0.854052
Target:  5'- gUUGAGguGcuucGCGAUGAACuGCUGg -3'
miRNA:   3'- -AGCUCguCuuuuCGCUGCUUGuCGGC- -5'
33070 3' -51.3 NC_007497.1 + 6087 0.66 0.854052
Target:  5'- cCGAGCAGuucuccGGCGACGGAaucucgacaAGCgCGu -3'
miRNA:   3'- aGCUCGUCuuu---UCGCUGCUUg--------UCG-GC- -5'
33070 3' -51.3 NC_007497.1 + 23234 0.66 0.854052
Target:  5'- aCGAGCgcgcGGGAGAGCuGGCGGAauacGCUGa -3'
miRNA:   3'- aGCUCG----UCUUUUCG-CUGCUUgu--CGGC- -5'
33070 3' -51.3 NC_007497.1 + 35149 0.66 0.845167
Target:  5'- gCG-GCGGAGGucGCGGCGca-GGCCGa -3'
miRNA:   3'- aGCuCGUCUUUu-CGCUGCuugUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 33387 0.66 0.845167
Target:  5'- gUCGAgGCGGu--GGCGACcGACAaGCUGa -3'
miRNA:   3'- -AGCU-CGUCuuuUCGCUGcUUGU-CGGC- -5'
33070 3' -51.3 NC_007497.1 + 37170 0.67 0.836039
Target:  5'- cCGuGCGGAGAAGCGACu----GCCc -3'
miRNA:   3'- aGCuCGUCUUUUCGCUGcuuguCGGc -5'
33070 3' -51.3 NC_007497.1 + 23571 0.67 0.836039
Target:  5'- cUGGGCGc---GGCGGCGGGC-GCCGg -3'
miRNA:   3'- aGCUCGUcuuuUCGCUGCUUGuCGGC- -5'
33070 3' -51.3 NC_007497.1 + 39069 0.67 0.836039
Target:  5'- aCGAGUgcccGGAAGAGCuGGaagacggugccCGAGCGGUCGg -3'
miRNA:   3'- aGCUCG----UCUUUUCG-CU-----------GCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 39436 0.67 0.835113
Target:  5'- cCGAGgugccggacaugcCGGAuguGGCGGCGAACucgacGCCGa -3'
miRNA:   3'- aGCUC-------------GUCUuu-UCGCUGCUUGu----CGGC- -5'
33070 3' -51.3 NC_007497.1 + 32537 0.67 0.826677
Target:  5'- ---cGCcGAGAAGCGACGAcgAGCUGu -3'
miRNA:   3'- agcuCGuCUUUUCGCUGCUugUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 30124 0.67 0.826677
Target:  5'- aUCGcugcagccAGCGGAucAGCGgguGCGAAC-GCCGg -3'
miRNA:   3'- -AGC--------UCGUCUuuUCGC---UGCUUGuCGGC- -5'
33070 3' -51.3 NC_007497.1 + 23945 0.67 0.826677
Target:  5'- aUCGGGuCGGccgcGCGACGAGCucgAGCCc -3'
miRNA:   3'- -AGCUC-GUCuuuuCGCUGCUUG---UCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.