miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33092 5' -56.9 NC_007497.1 + 31959 0.66 0.572926
Target:  5'- cGUGgGGCGCGCgGAcAUGAUC--GCCg -3'
miRNA:   3'- aCGCgCCGUGCGaCU-UGCUGGuuCGG- -5'
33092 5' -56.9 NC_007497.1 + 40209 0.66 0.572926
Target:  5'- -uCGCGGCAgCGCaGAugGGCgCGaacggcgugaAGCCg -3'
miRNA:   3'- acGCGCCGU-GCGaCUugCUG-GU----------UCGG- -5'
33092 5' -56.9 NC_007497.1 + 2459 0.66 0.571833
Target:  5'- cGCGCGGCgacgcgccaucacGCGCaUGuauuCGuCCGGGCg -3'
miRNA:   3'- aCGCGCCG-------------UGCG-ACuu--GCuGGUUCGg -5'
33092 5' -56.9 NC_007497.1 + 34571 0.66 0.562019
Target:  5'- cUGCcCGGCAUcCUG-ACGACCGucGGCa -3'
miRNA:   3'- -ACGcGCCGUGcGACuUGCUGGU--UCGg -5'
33092 5' -56.9 NC_007497.1 + 15111 0.66 0.562019
Target:  5'- cGCGUGGCGCGCc--GCuACCcgAAGCUc -3'
miRNA:   3'- aCGCGCCGUGCGacuUGcUGG--UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 4178 0.66 0.551169
Target:  5'- gGCuGCGGUGCGC--GACG-CgCGGGCCg -3'
miRNA:   3'- aCG-CGCCGUGCGacUUGCuG-GUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 5448 0.66 0.551169
Target:  5'- cGgGCGaGCGCGCcGGACGuacgcgUCAGGUCg -3'
miRNA:   3'- aCgCGC-CGUGCGaCUUGCu-----GGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 5811 0.66 0.551169
Target:  5'- cGUGCGGUGCgGUUGAaucccucgACGGCuCGGuGCCg -3'
miRNA:   3'- aCGCGCCGUG-CGACU--------UGCUG-GUU-CGG- -5'
33092 5' -56.9 NC_007497.1 + 23912 0.66 0.551169
Target:  5'- cGCGCGccuggaGCACGuCUGAuCGAgCAcgcggAGCCc -3'
miRNA:   3'- aCGCGC------CGUGC-GACUuGCUgGU-----UCGG- -5'
33092 5' -56.9 NC_007497.1 + 278 0.66 0.550087
Target:  5'- -aCGCGaGCACcacuucaGC-GGGCGACCAcccAGCCa -3'
miRNA:   3'- acGCGC-CGUG-------CGaCUUGCUGGU---UCGG- -5'
33092 5' -56.9 NC_007497.1 + 34791 0.66 0.550087
Target:  5'- cGCgGCGGCGCucGCUGAA--ACCGaaaagggucucgcGGCCg -3'
miRNA:   3'- aCG-CGCCGUG--CGACUUgcUGGU-------------UCGG- -5'
33092 5' -56.9 NC_007497.1 + 8755 0.66 0.549006
Target:  5'- gGCGCaGGCAaGCUGugccgacgacGGCGACCuuccacaucugcAGCCg -3'
miRNA:   3'- aCGCG-CCGUgCGAC----------UUGCUGGu-----------UCGG- -5'
33092 5' -56.9 NC_007497.1 + 2343 0.66 0.540384
Target:  5'- cGCGCaagaaguugauGGCACGCcgugcGAAgcgccCGACCGuGGCCg -3'
miRNA:   3'- aCGCG-----------CCGUGCGa----CUU-----GCUGGU-UCGG- -5'
33092 5' -56.9 NC_007497.1 + 40060 0.66 0.540384
Target:  5'- aGCGCGGCcugcacgucgccGCGCUucACGugC--GCCu -3'
miRNA:   3'- aCGCGCCG------------UGCGAcuUGCugGuuCGG- -5'
33092 5' -56.9 NC_007497.1 + 26534 0.66 0.540384
Target:  5'- aGCGCGGaaacgAUGCUGAuggggaaaACGACUccaccGCCg -3'
miRNA:   3'- aCGCGCCg----UGCGACU--------UGCUGGuu---CGG- -5'
33092 5' -56.9 NC_007497.1 + 17225 0.66 0.540384
Target:  5'- cGCGCaGGCagACGCUcg--GGCCGGGCUg -3'
miRNA:   3'- aCGCG-CCG--UGCGAcuugCUGGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 23738 0.66 0.52967
Target:  5'- gGCGCGuGCcguGCGCUcAACGagGCCGacaacGGCCg -3'
miRNA:   3'- aCGCGC-CG---UGCGAcUUGC--UGGU-----UCGG- -5'
33092 5' -56.9 NC_007497.1 + 35644 0.67 0.519036
Target:  5'- gGCGUGGCcgacgcgaucGCGCgcgGcAugGGCCGGGgCa -3'
miRNA:   3'- aCGCGCCG----------UGCGa--C-UugCUGGUUCgG- -5'
33092 5' -56.9 NC_007497.1 + 29178 0.67 0.517977
Target:  5'- gGCGCgugcaucGGCugGCUGuuucguCGACagccgAGGCCg -3'
miRNA:   3'- aCGCG-------CCGugCGACuu----GCUGg----UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 30159 0.67 0.508487
Target:  5'- aGCGCcacuGGCACGUgccGACGAUCuGGCg -3'
miRNA:   3'- aCGCG----CCGUGCGac-UUGCUGGuUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.