miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 5' -51.5 NC_007497.1 + 23198 0.66 0.874872
Target:  5'- gCCGAGcacGUCG-GCAAGCAGAucgaggGCGuCGCc -3'
miRNA:   3'- -GGCUC---UAGUgCGUUCGUCU------UGU-GCGu -5'
33097 5' -51.5 NC_007497.1 + 606 0.66 0.866644
Target:  5'- cCCG-GAUCAgGCuGAGCAGGcAguCGCGa -3'
miRNA:   3'- -GGCuCUAGUgCG-UUCGUCU-UguGCGU- -5'
33097 5' -51.5 NC_007497.1 + 11160 0.66 0.866644
Target:  5'- -gGAGGUCGCG-AAGCAGcucuCugGCu -3'
miRNA:   3'- ggCUCUAGUGCgUUCGUCuu--GugCGu -5'
33097 5' -51.5 NC_007497.1 + 21091 0.66 0.866644
Target:  5'- aCCGGGcuaucaAUCACGguGuGCGGGuacugcggGCGCGCGa -3'
miRNA:   3'- -GGCUC------UAGUGCguU-CGUCU--------UGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 30175 0.66 0.866644
Target:  5'- gCCGAcGAUCugGCGuGCgGGAACcUGCu -3'
miRNA:   3'- -GGCU-CUAGugCGUuCG-UCUUGuGCGu -5'
33097 5' -51.5 NC_007497.1 + 12153 0.66 0.864124
Target:  5'- aUCGcGGAUCucgcgcgguucgcuGCGCGAGCGGcAUugGCGc -3'
miRNA:   3'- -GGC-UCUAG--------------UGCGUUCGUCuUGugCGU- -5'
33097 5' -51.5 NC_007497.1 + 29368 0.66 0.86158
Target:  5'- cCCGuGAaccuguUCACaugagGCGAGCAGGgcguugucguuuugcGCACGCGa -3'
miRNA:   3'- -GGCuCU------AGUG-----CGUUCGUCU---------------UGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 2540 0.66 0.858152
Target:  5'- cCCGGGcgUGCGCGccGGCGGccGCgGCGCAu -3'
miRNA:   3'- -GGCUCuaGUGCGU--UCGUCu-UG-UGCGU- -5'
33097 5' -51.5 NC_007497.1 + 17244 0.66 0.858152
Target:  5'- gCCGGGcUgACGgaCGAGCAGcgcAGCACGCu -3'
miRNA:   3'- -GGCUCuAgUGC--GUUCGUC---UUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 6890 0.66 0.849404
Target:  5'- gCGucGAUCGCuCAGGCcGAGgGCGCAa -3'
miRNA:   3'- gGCu-CUAGUGcGUUCGuCUUgUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 38100 0.66 0.848516
Target:  5'- gCCGucGGAgcgaauuugaaacUCGCGCGAGUGGAuuagaaACGCGCc -3'
miRNA:   3'- -GGC--UCU-------------AGUGCGUUCGUCU------UGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 42255 0.66 0.847625
Target:  5'- gCCGGcGcgCACGCccgggcagaaguGGCAGGAC-CGCAu -3'
miRNA:   3'- -GGCU-CuaGUGCGu-----------UCGUCUUGuGCGU- -5'
33097 5' -51.5 NC_007497.1 + 4641 0.66 0.84041
Target:  5'- aUCaAGAUCGCgGCAGcGCAGAugGgCGCGa -3'
miRNA:   3'- -GGcUCUAGUG-CGUU-CGUCUugU-GCGU- -5'
33097 5' -51.5 NC_007497.1 + 42128 0.66 0.832113
Target:  5'- gCCGAuuaccgcuccacacGAUcCGCGCcaucgacucgccgucGAGCAGcGCGCGCAg -3'
miRNA:   3'- -GGCU--------------CUA-GUGCG---------------UUCGUCuUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 22720 0.66 0.832113
Target:  5'- gCCGuuGAUCACGCcgGGGUAGAuagcgaugucagcacCACGCGc -3'
miRNA:   3'- -GGCu-CUAGUGCG--UUCGUCUu--------------GUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 8423 0.66 0.831179
Target:  5'- -gGAGA--GCGUggGCAGAGCAaGCu -3'
miRNA:   3'- ggCUCUagUGCGuuCGUCUUGUgCGu -5'
33097 5' -51.5 NC_007497.1 + 20840 0.66 0.831179
Target:  5'- aUCGAGAUCacccgACGCuuaacgGAGCAGAACcucuACGUc -3'
miRNA:   3'- -GGCUCUAG-----UGCG------UUCGUCUUG----UGCGu -5'
33097 5' -51.5 NC_007497.1 + 39943 0.66 0.831179
Target:  5'- aCCGGcuggACGC-GGCAGAGCugGCGc -3'
miRNA:   3'- -GGCUcuagUGCGuUCGUCUUGugCGU- -5'
33097 5' -51.5 NC_007497.1 + 12030 0.66 0.831179
Target:  5'- gCCGAGA--ACGCc-GCuGGGCGCGCc -3'
miRNA:   3'- -GGCUCUagUGCGuuCGuCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 24394 0.66 0.831179
Target:  5'- uCCGuccucGAUCGCGCGca-GGAAUACGCc -3'
miRNA:   3'- -GGCu----CUAGUGCGUucgUCUUGUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.