miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33112 3' -56.2 NC_007497.1 + 23479 0.66 0.600431
Target:  5'- cGCGC-GCGCUGAucaggugcacgACGCcgGCGCccGCCg -3'
miRNA:   3'- uUGCGuCGUGGCU-----------UGCGa-CGCGa-UGG- -5'
33112 3' -56.2 NC_007497.1 + 17392 0.66 0.600431
Target:  5'- aGACGCGGUACaCGGucGCGCUcGUcaGCUAUa -3'
miRNA:   3'- -UUGCGUCGUG-GCU--UGCGA-CG--CGAUGg -5'
33112 3' -56.2 NC_007497.1 + 5382 0.66 0.600431
Target:  5'- uAGCGgGGCAgCCGGcgACGCUGgcggGCUAUCc -3'
miRNA:   3'- -UUGCgUCGU-GGCU--UGCGACg---CGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 42005 0.66 0.600431
Target:  5'- --aGCGGCcgaACCgGAACGCUcGgGCUgGCCa -3'
miRNA:   3'- uugCGUCG---UGG-CUUGCGA-CgCGA-UGG- -5'
33112 3' -56.2 NC_007497.1 + 15255 0.66 0.58926
Target:  5'- -cCGCGGacgccgGCCGAGCGCcgcgagGCGCgcauCCa -3'
miRNA:   3'- uuGCGUCg-----UGGCUUGCGa-----CGCGau--GG- -5'
33112 3' -56.2 NC_007497.1 + 8345 0.66 0.58926
Target:  5'- gGACGCuugccgAGCugCGcGCGCagaUGUcgGCUGCCg -3'
miRNA:   3'- -UUGCG------UCGugGCuUGCG---ACG--CGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 14909 0.66 0.58926
Target:  5'- cACGCAcuCGCCGAguauccGCGCgaGUGCUGCg -3'
miRNA:   3'- uUGCGUc-GUGGCU------UGCGa-CGCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 15098 0.66 0.567039
Target:  5'- cGGCGCAGCcgagcaugGCCGAucguaccguAUGCgagcGCGCUGgCa -3'
miRNA:   3'- -UUGCGUCG--------UGGCU---------UGCGa---CGCGAUgG- -5'
33112 3' -56.2 NC_007497.1 + 29522 0.66 0.567039
Target:  5'- gGAUGC-GCGCCu--CGCgGCGCUcgGCCg -3'
miRNA:   3'- -UUGCGuCGUGGcuuGCGaCGCGA--UGG- -5'
33112 3' -56.2 NC_007497.1 + 15582 0.66 0.567039
Target:  5'- cGACaGCuGUACCacggUGCUGCGCUACg -3'
miRNA:   3'- -UUG-CGuCGUGGcuu-GCGACGCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 39473 0.66 0.567039
Target:  5'- --aGCuuccGCACCuGACGCUGCGUguUGCg -3'
miRNA:   3'- uugCGu---CGUGGcUUGCGACGCG--AUGg -5'
33112 3' -56.2 NC_007497.1 + 4288 0.66 0.565933
Target:  5'- aAACGCcaCGCCGGGCGCUGgcgaagaCGUUGCa -3'
miRNA:   3'- -UUGCGucGUGGCUUGCGAC-------GCGAUGg -5'
33112 3' -56.2 NC_007497.1 + 4206 0.66 0.560412
Target:  5'- uGGCGC-GCGCCGGguauucccgguccauGCGCcgugaUGCGCUcaaaGCCc -3'
miRNA:   3'- -UUGCGuCGUGGCU---------------UGCG-----ACGCGA----UGG- -5'
33112 3' -56.2 NC_007497.1 + 16829 0.66 0.560412
Target:  5'- aGGCGau-CACCGAAaucaucgaccgcaaGCUGCGCUAUCc -3'
miRNA:   3'- -UUGCgucGUGGCUUg-------------CGACGCGAUGG- -5'
33112 3' -56.2 NC_007497.1 + 21933 0.66 0.556006
Target:  5'- -uCGCAGCGCgcgCGAACGaugGCGCcGCa -3'
miRNA:   3'- uuGCGUCGUG---GCUUGCga-CGCGaUGg -5'
33112 3' -56.2 NC_007497.1 + 34822 0.66 0.556006
Target:  5'- cGACGCcucGGCACgcuCGAGCucgccCUGCGCgGCCg -3'
miRNA:   3'- -UUGCG---UCGUG---GCUUGc----GACGCGaUGG- -5'
33112 3' -56.2 NC_007497.1 + 8573 0.66 0.556006
Target:  5'- gAGCGCGGC-CCGAAguuCGUgGCGgaGCUa -3'
miRNA:   3'- -UUGCGUCGuGGCUU---GCGaCGCgaUGG- -5'
33112 3' -56.2 NC_007497.1 + 4652 0.66 0.556006
Target:  5'- --gGCAGCGCagauGGGCGCgaacgGCGUgaaGCCg -3'
miRNA:   3'- uugCGUCGUGg---CUUGCGa----CGCGa--UGG- -5'
33112 3' -56.2 NC_007497.1 + 2561 0.66 0.552709
Target:  5'- -cCGCGGCGcauccuugcgauuuCCGAGCGCguagaUGCG-UGCCg -3'
miRNA:   3'- uuGCGUCGU--------------GGCUUGCG-----ACGCgAUGG- -5'
33112 3' -56.2 NC_007497.1 + 31929 0.66 0.552709
Target:  5'- uACGUAGCguccgguuauucagGCCGucggcugcGCGCUGCGUgUACCc -3'
miRNA:   3'- uUGCGUCG--------------UGGCu-------UGCGACGCG-AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.