miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33120 5' -55.3 NC_007497.1 + 36905 0.66 0.693987
Target:  5'- gGGUUCagaauUGCgGCGCGGAuGCGC-CCGGu -3'
miRNA:   3'- -CCAAGc----ACG-CGUGCUU-CGCGuGGCUg -5'
33120 5' -55.3 NC_007497.1 + 41066 0.66 0.693987
Target:  5'- -cUUCGcGCGCgccgauguuGCGAAGCGCcgcGCUGAUc -3'
miRNA:   3'- ccAAGCaCGCG---------UGCUUCGCG---UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 3374 0.66 0.683009
Target:  5'- ---cCGUGCgGCGCacuGCGCGCgGGCg -3'
miRNA:   3'- ccaaGCACG-CGUGcuuCGCGUGgCUG- -5'
33120 5' -55.3 NC_007497.1 + 23861 0.66 0.683009
Target:  5'- aGGcgCGcGCgGCACucauccggcguGAAGCGCugGCCGGCg -3'
miRNA:   3'- -CCaaGCaCG-CGUG-----------CUUCGCG--UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 7774 0.66 0.679706
Target:  5'- cGUUCGggucagcgGCGCGcCGAAGCuuguuccgccuccgGCGCCGcCg -3'
miRNA:   3'- cCAAGCa-------CGCGU-GCUUCG--------------CGUGGCuG- -5'
33120 5' -55.3 NC_007497.1 + 21932 0.66 0.671982
Target:  5'- --gUCGcagcGCGCGCGAacgauGGCGCcgcaACUGACg -3'
miRNA:   3'- ccaAGCa---CGCGUGCU-----UCGCG----UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 17518 0.66 0.671982
Target:  5'- cGUUCGgGUGCACGucgcAGGCGCAggcacaucgcgUCGGCc -3'
miRNA:   3'- cCAAGCaCGCGUGC----UUCGCGU-----------GGCUG- -5'
33120 5' -55.3 NC_007497.1 + 20905 0.66 0.671982
Target:  5'- ---aCGUGCGCGcCGGccAGCGCuucacGCCGGa -3'
miRNA:   3'- ccaaGCACGCGU-GCU--UCGCG-----UGGCUg -5'
33120 5' -55.3 NC_007497.1 + 16286 0.66 0.671982
Target:  5'- ---cCGcGCGCGCGAAG-GUGCuCGACa -3'
miRNA:   3'- ccaaGCaCGCGUGCUUCgCGUG-GCUG- -5'
33120 5' -55.3 NC_007497.1 + 2983 0.66 0.671982
Target:  5'- ---aCGgGCGCAUGAAGCGU-CCGuGCa -3'
miRNA:   3'- ccaaGCaCGCGUGCUUCGCGuGGC-UG- -5'
33120 5' -55.3 NC_007497.1 + 41413 0.66 0.649823
Target:  5'- --aUCGccCGCGCGcAGUGCGCCGcACg -3'
miRNA:   3'- ccaAGCacGCGUGCuUCGCGUGGC-UG- -5'
33120 5' -55.3 NC_007497.1 + 42529 0.67 0.627598
Target:  5'- uGGcaCGc-CGUGCGAAGCGC-CCGACc -3'
miRNA:   3'- -CCaaGCacGCGUGCUUCGCGuGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 15119 0.67 0.616486
Target:  5'- --aUCGUacCGUAUGcGAGCGCGCUGGCa -3'
miRNA:   3'- ccaAGCAc-GCGUGC-UUCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 30096 0.67 0.602063
Target:  5'- uGGUgaucUCGUucaugcuucaccucGCGCGCGGAGCaugGCGUCGGCg -3'
miRNA:   3'- -CCA----AGCA--------------CGCGUGCUUCG---CGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 36153 0.67 0.583273
Target:  5'- cGUgaagCGgaaGCGgGCGggGCGCGUCGGCc -3'
miRNA:   3'- cCAa---GCa--CGCgUGCuuCGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 21275 0.67 0.583273
Target:  5'- uGGUcgCGcugcuggGCGCgGCGgcGgGCGCCGGCg -3'
miRNA:   3'- -CCAa-GCa------CGCG-UGCuuCgCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 11452 0.67 0.583273
Target:  5'- cGGaUCGcgcagcUGCGCGuCGAGGCggugGCgACCGACa -3'
miRNA:   3'- -CCaAGC------ACGCGU-GCUUCG----CG-UGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 30045 0.68 0.550431
Target:  5'- cGGUgcgcuUCGUGCGCACGAAccaucCGCAggcuUCGAg -3'
miRNA:   3'- -CCA-----AGCACGCGUGCUUc----GCGU----GGCUg -5'
33120 5' -55.3 NC_007497.1 + 24631 0.68 0.539604
Target:  5'- gGGUUCGgaagUGCGUaaaaucagGCGA--UGCGCCGGCa -3'
miRNA:   3'- -CCAAGC----ACGCG--------UGCUucGCGUGGCUG- -5'
33120 5' -55.3 NC_007497.1 + 4208 0.68 0.528851
Target:  5'- cGGcgCcaUGCGCACGAAGCcgaGCAUCGGu -3'
miRNA:   3'- -CCaaGc-ACGCGUGCUUCG---CGUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.