miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33132 3' -64.4 NC_007497.1 + 20908 0.66 0.267674
Target:  5'- uGCGCGcCGGCCagcgcuucacGCCGGauGaGugCCGCg -3'
miRNA:   3'- -CGUGC-GCCGG----------CGGCCggCaCugGGUG- -5'
33132 3' -64.4 NC_007497.1 + 12846 0.66 0.267674
Target:  5'- aGCGCGCaGCCGaCGGCC-UGAauaaCCGg -3'
miRNA:   3'- -CGUGCGcCGGCgGCCGGcACUg---GGUg -5'
33132 3' -64.4 NC_007497.1 + 14942 0.66 0.267674
Target:  5'- -gACGCGGCgcugaucaaaGCCGGCCGgaaaaGGCgCCGg -3'
miRNA:   3'- cgUGCGCCGg---------CGGCCGGCa----CUG-GGUg -5'
33132 3' -64.4 NC_007497.1 + 40238 0.66 0.254915
Target:  5'- aCGCGuCGGaCGUCGGCa--GACCCGCc -3'
miRNA:   3'- cGUGC-GCCgGCGGCCGgcaCUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 1819 0.66 0.248725
Target:  5'- aGCGCGCugGGCUucuauacaagGCCGG-CGUcGACCCGg -3'
miRNA:   3'- -CGUGCG--CCGG----------CGGCCgGCA-CUGGGUg -5'
33132 3' -64.4 NC_007497.1 + 23772 0.66 0.248724
Target:  5'- uCACgGCGGCCGCgagcUGGUacgUGUGGCCCu- -3'
miRNA:   3'- cGUG-CGCCGGCG----GCCG---GCACUGGGug -5'
33132 3' -64.4 NC_007497.1 + 31169 0.66 0.242659
Target:  5'- cCAUGCGGCgGCCcGCUcuuccucaGUGGCCuCACc -3'
miRNA:   3'- cGUGCGCCGgCGGcCGG--------CACUGG-GUG- -5'
33132 3' -64.4 NC_007497.1 + 6245 0.66 0.242659
Target:  5'- aGCAuCGCGcCCgacauGCCGaGCCGUGGCgCCAg -3'
miRNA:   3'- -CGU-GCGCcGG-----CGGC-CGGCACUG-GGUg -5'
33132 3' -64.4 NC_007497.1 + 17203 0.66 0.242659
Target:  5'- --uCGCGGCCGCCccgcaGCC---GCCCGCg -3'
miRNA:   3'- cguGCGCCGGCGGc----CGGcacUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 13869 0.66 0.242659
Target:  5'- cGCACGgGacGCCGCaugGGCCGccgcagggGACgCCGCa -3'
miRNA:   3'- -CGUGCgC--CGGCGg--CCGGCa-------CUG-GGUG- -5'
33132 3' -64.4 NC_007497.1 + 34581 0.66 0.236717
Target:  5'- cGCGgGCGGCCGCCGuuugCGcGACCgcggCACg -3'
miRNA:   3'- -CGUgCGCCGGCGGCcg--GCaCUGG----GUG- -5'
33132 3' -64.4 NC_007497.1 + 1188 0.67 0.230898
Target:  5'- -aGCGaCGaGCCGCCGGCCgGUGugUUc- -3'
miRNA:   3'- cgUGC-GC-CGGCGGCCGG-CACugGGug -5'
33132 3' -64.4 NC_007497.1 + 38978 0.67 0.230898
Target:  5'- -gACGaaGCUGCCGGgCG-GACUCGCg -3'
miRNA:   3'- cgUGCgcCGGCGGCCgGCaCUGGGUG- -5'
33132 3' -64.4 NC_007497.1 + 42947 0.67 0.2252
Target:  5'- uGCAC-CGGCCGCUGGUaacGACCguCu -3'
miRNA:   3'- -CGUGcGCCGGCGGCCGgcaCUGGguG- -5'
33132 3' -64.4 NC_007497.1 + 21349 0.67 0.2252
Target:  5'- -aAgGCGGCCGCC-GCUcaGGCCCAg -3'
miRNA:   3'- cgUgCGCCGGCGGcCGGcaCUGGGUg -5'
33132 3' -64.4 NC_007497.1 + 18027 0.67 0.219621
Target:  5'- aGCA-GCGGCCGgugaCGGUCGUGcCgCCAUc -3'
miRNA:   3'- -CGUgCGCCGGCg---GCCGGCACuG-GGUG- -5'
33132 3' -64.4 NC_007497.1 + 28224 0.67 0.216331
Target:  5'- uGCAgCGCaGGCaCGCCGaagcgaauacggacuGCCGUGAgCUGCg -3'
miRNA:   3'- -CGU-GCG-CCG-GCGGC---------------CGGCACUgGGUG- -5'
33132 3' -64.4 NC_007497.1 + 19000 0.67 0.214161
Target:  5'- -aAUGCGGCCGCCGuGCa--GACCguCg -3'
miRNA:   3'- cgUGCGCCGGCGGC-CGgcaCUGGguG- -5'
33132 3' -64.4 NC_007497.1 + 23864 0.67 0.214161
Target:  5'- cGCGCGCGGCacucauCCGGCgugaagCGcUGGCCgGCg -3'
miRNA:   3'- -CGUGCGCCGgc----GGCCG------GC-ACUGGgUG- -5'
33132 3' -64.4 NC_007497.1 + 11668 0.67 0.214161
Target:  5'- uCGCGCGGCCcggaaccgGCaCGGCCGggaguagccgGGCgCGCg -3'
miRNA:   3'- cGUGCGCCGG--------CG-GCCGGCa---------CUGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.