miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33166 3' -56.2 NC_007497.1 + 4048 0.66 0.669211
Target:  5'- gCCGCGuccccgaaccGCU--CGCGUAccgCCGCGAugAGCu -3'
miRNA:   3'- -GGCGC----------CGAagGCGCAUa--GGCGCU--UCG- -5'
33166 3' -56.2 NC_007497.1 + 40731 0.66 0.658307
Target:  5'- aUCGCGGCgguaCGCGagcgGUUCGgGGAcGCg -3'
miRNA:   3'- -GGCGCCGaag-GCGCa---UAGGCgCUU-CG- -5'
33166 3' -56.2 NC_007497.1 + 11963 0.66 0.644098
Target:  5'- -aGCGGCUcacguugagcgcgaUUgGCGUGUUgGCGcGAGCc -3'
miRNA:   3'- ggCGCCGA--------------AGgCGCAUAGgCGC-UUCG- -5'
33166 3' -56.2 NC_007497.1 + 23450 0.66 0.636438
Target:  5'- -aGCGGCggCCGCcuucaUGUCgGCGAucucGCg -3'
miRNA:   3'- ggCGCCGaaGGCGc----AUAGgCGCUu---CG- -5'
33166 3' -56.2 NC_007497.1 + 41059 0.66 0.636438
Target:  5'- aCCGUGaCUUCgCGCGcgccgaugUUGCGAAGCg -3'
miRNA:   3'- -GGCGCcGAAG-GCGCaua-----GGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 16559 0.66 0.636438
Target:  5'- uCCGUauucGCUUCgGCGUGcCUGCGcuGCa -3'
miRNA:   3'- -GGCGc---CGAAGgCGCAUaGGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 29989 0.66 0.636438
Target:  5'- gCCGCGGUcauuugCCGCcgagcaGUCgGCGAcgAGCa -3'
miRNA:   3'- -GGCGCCGaa----GGCGca----UAGgCGCU--UCG- -5'
33166 3' -56.2 NC_007497.1 + 5159 0.66 0.625493
Target:  5'- aUCGCGGg--CgGUGccaaugCCGCGAAGCa -3'
miRNA:   3'- -GGCGCCgaaGgCGCaua---GGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 16674 0.66 0.625493
Target:  5'- -aGCGcGCcgCuCGCGUGaCCGCGucGCg -3'
miRNA:   3'- ggCGC-CGaaG-GCGCAUaGGCGCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 2551 0.66 0.625493
Target:  5'- gCGcCGGCggCCGCGgcgcAUCCuuGCGAuuuccgAGCg -3'
miRNA:   3'- gGC-GCCGaaGGCGCa---UAGG--CGCU------UCG- -5'
33166 3' -56.2 NC_007497.1 + 11338 0.66 0.614554
Target:  5'- gCCGCGcaggUCgCGCGUAUCgGCGucaauGCg -3'
miRNA:   3'- -GGCGCcga-AG-GCGCAUAGgCGCuu---CG- -5'
33166 3' -56.2 NC_007497.1 + 39477 0.66 0.614554
Target:  5'- uCCGCacCUgacgCUGCGUGUugcgguucaUCGCGAAGCg -3'
miRNA:   3'- -GGCGccGAa---GGCGCAUA---------GGCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 28418 0.66 0.614554
Target:  5'- gCCGuCGGCaUUCUggaucgGCGUA-CCGuCGAGGUa -3'
miRNA:   3'- -GGC-GCCG-AAGG------CGCAUaGGC-GCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 44263 0.66 0.614554
Target:  5'- aUGCGGCUgcauuaCGCagaucGUcgCCGCGAGcGCu -3'
miRNA:   3'- gGCGCCGAag----GCG-----CAuaGGCGCUU-CG- -5'
33166 3' -56.2 NC_007497.1 + 38987 0.66 0.614554
Target:  5'- gCCG-GGCggacUCGCGgagugGUUgGCGAGGCg -3'
miRNA:   3'- -GGCgCCGaa--GGCGCa----UAGgCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 14959 0.67 0.60363
Target:  5'- -aGCGGCgggUgaGUGUAUuuGcCGggGCg -3'
miRNA:   3'- ggCGCCGa--AggCGCAUAggC-GCuuCG- -5'
33166 3' -56.2 NC_007497.1 + 31577 0.67 0.60363
Target:  5'- gUGCcGCUUCCGC-UcgCCGCGAugauGUa -3'
miRNA:   3'- gGCGcCGAAGGCGcAuaGGCGCUu---CG- -5'
33166 3' -56.2 NC_007497.1 + 9214 0.67 0.60363
Target:  5'- gCGUGGCcgaCGCG-AUCgCGCGcGGCa -3'
miRNA:   3'- gGCGCCGaagGCGCaUAG-GCGCuUCG- -5'
33166 3' -56.2 NC_007497.1 + 4905 0.67 0.60363
Target:  5'- -gGCGGCacgacgaGCGgcuggGUCgGCGAAGCa -3'
miRNA:   3'- ggCGCCGaagg---CGCa----UAGgCGCUUCG- -5'
33166 3' -56.2 NC_007497.1 + 5517 0.67 0.602538
Target:  5'- uUCGCGuGCUg-CGCG-AUCCguacacgGCGAAGCc -3'
miRNA:   3'- -GGCGC-CGAagGCGCaUAGG-------CGCUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.