Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33166 | 5' | -53.9 | NC_007497.1 | + | 33105 | 0.66 | 0.778847 |
Target: 5'- uCGGCgUCGAUCuGCGCGcUG-CGUU-CCu -3' miRNA: 3'- -GUCGgAGCUAG-CGCGC-AUgGCAAuGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 2414 | 0.66 | 0.758297 |
Target: 5'- -uGCCgCGAugUCGCGCuuagcaGUGCCGgugcGCCg -3' miRNA: 3'- guCGGaGCU--AGCGCG------CAUGGCaa--UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 7177 | 0.66 | 0.758297 |
Target: 5'- uGGCCgaccagaucaUCGAUCGCGUGgaaucgACCGgcAUg -3' miRNA: 3'- gUCGG----------AGCUAGCGCGCa-----UGGCaaUGg -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 10201 | 0.66 | 0.758297 |
Target: 5'- -uGCCgCGGUCGCGCaaACgGcgGCCg -3' miRNA: 3'- guCGGaGCUAGCGCGcaUGgCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 42579 | 0.66 | 0.757255 |
Target: 5'- gCGGCCUgccguggCGAgccgugcuauUUGCGCGUGCCcgGUgucUGCCg -3' miRNA: 3'- -GUCGGA-------GCU----------AGCGCGCAUGG--CA---AUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 2251 | 0.66 | 0.747817 |
Target: 5'- uCGGCCaCGGUCGgGCGcuucGCaCGgcgUGCCa -3' miRNA: 3'- -GUCGGaGCUAGCgCGCa---UG-GCa--AUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 27863 | 0.66 | 0.72543 |
Target: 5'- uCAGaCCUCGAaCGUgguacgaGCGcACCGggACCu -3' miRNA: 3'- -GUC-GGAGCUaGCG-------CGCaUGGCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 36586 | 0.67 | 0.7157 |
Target: 5'- aGGCCUgagcgaagucgCGAUCGCGCGU--CGUcuCCa -3' miRNA: 3'- gUCGGA-----------GCUAGCGCGCAugGCAauGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 27229 | 0.67 | 0.7157 |
Target: 5'- --aCCUCGG-CGCGCGgcuCCGgcugGCCc -3' miRNA: 3'- gucGGAGCUaGCGCGCau-GGCaa--UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 29267 | 0.67 | 0.7157 |
Target: 5'- gCGGCCguacaugUGAU-GCGCGaacaUGCCGUcGCCg -3' miRNA: 3'- -GUCGGa------GCUAgCGCGC----AUGGCAaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 27222 | 0.67 | 0.698239 |
Target: 5'- -cGCCUCGuAUCGCGaCGUgagcaaaauccauugGCCGacgcgaugUGCCu -3' miRNA: 3'- guCGGAGC-UAGCGC-GCA---------------UGGCa-------AUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 28422 | 0.67 | 0.682819 |
Target: 5'- uCGGCauuCUgGAUCG-GCGUACCGUcgagguagACCg -3' miRNA: 3'- -GUCG---GAgCUAGCgCGCAUGGCAa-------UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 20837 | 0.67 | 0.671744 |
Target: 5'- gGGgCUCGAgcucgUCGCGCG-GCCGgacCCg -3' miRNA: 3'- gUCgGAGCU-----AGCGCGCaUGGCaauGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 4108 | 0.67 | 0.671744 |
Target: 5'- cCGGCC-CGcgCGuCGCGcACCGcaGCCa -3' miRNA: 3'- -GUCGGaGCuaGC-GCGCaUGGCaaUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 33830 | 0.67 | 0.671744 |
Target: 5'- -cGCCUCGuauucCGCGCGUugcuggGCgGUcaUACCg -3' miRNA: 3'- guCGGAGCua---GCGCGCA------UGgCA--AUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 34574 | 0.68 | 0.649489 |
Target: 5'- gAGCCU-GcgCGgGCGgccGCCGUUugCg -3' miRNA: 3'- gUCGGAgCuaGCgCGCa--UGGCAAugG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 4019 | 0.68 | 0.638332 |
Target: 5'- --uCCUCaauUCGCGcCGUGCCGUcucgGCCg -3' miRNA: 3'- gucGGAGcu-AGCGC-GCAUGGCAa---UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 29694 | 0.68 | 0.626053 |
Target: 5'- uCGGCCaugcUCGGcUGCGcCGUGCCGUUcggaugcgaaugcACCa -3' miRNA: 3'- -GUCGG----AGCUaGCGC-GCAUGGCAA-------------UGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 3901 | 0.68 | 0.620472 |
Target: 5'- uCAuCUUCGGUCGCgagucgucgugcacGCGUGCCGUcccgacguucuucgUGCCg -3' miRNA: 3'- -GUcGGAGCUAGCG--------------CGCAUGGCA--------------AUGG- -5' |
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33166 | 5' | -53.9 | NC_007497.1 | + | 16944 | 0.69 | 0.604866 |
Target: 5'- aGGUCU-GAUCGUGCGUguGCCGUgaACUa -3' miRNA: 3'- gUCGGAgCUAGCGCGCA--UGGCAa-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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