miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33264 5' -59.3 NC_007605.1 + 68469 0.66 0.780632
Target:  5'- aAGCg--CcGCCGCCAGCgAGuCCgCUGCu -3'
miRNA:   3'- gUCGacaGaCGGUGGUCG-UC-GG-GACG- -5'
33264 5' -59.3 NC_007605.1 + 73226 0.66 0.772353
Target:  5'- -uGcCUGUCUGCaaaauggcagaggaaGaCCGGUAGCCgCUGCa -3'
miRNA:   3'- guC-GACAGACGg--------------U-GGUCGUCGG-GACG- -5'
33264 5' -59.3 NC_007605.1 + 75776 0.66 0.765845
Target:  5'- uGGCagGUCggGCCugGCCAuGCaggguauucuagugaAGCCCUGCa -3'
miRNA:   3'- gUCGa-CAGa-CGG--UGGU-CG---------------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 56386 0.66 0.752663
Target:  5'- uGGCcGUCcgGuCCAagaauGCGGCCCUGCa -3'
miRNA:   3'- gUCGaCAGa-C-GGUggu--CGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 48819 0.66 0.752663
Target:  5'- aGGCUGgCUgaGCCACCgAGC-GCCC-GCu -3'
miRNA:   3'- gUCGACaGA--CGGUGG-UCGuCGGGaCG- -5'
33264 5' -59.3 NC_007605.1 + 115200 0.66 0.752663
Target:  5'- aCAGCUGUCacccaUGCCuccCCAGCAacaGaUCUUGCu -3'
miRNA:   3'- -GUCGACAG-----ACGGu--GGUCGU---C-GGGACG- -5'
33264 5' -59.3 NC_007605.1 + 28613 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 25544 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 34751 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 22475 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 19406 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 16337 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 13268 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 31682 0.66 0.749811
Target:  5'- cCAGCUucuggccuccccggGUCcaccagGCCAgccggagggaccCCGGCAGCCCggGCg -3'
miRNA:   3'- -GUCGA--------------CAGa-----CGGU------------GGUCGUCGGGa-CG- -5'
33264 5' -59.3 NC_007605.1 + 64425 0.66 0.732516
Target:  5'- cCGGCuucUGUgccucaaccacCUGCCuCUacgcgggucucagGGCAGCCCUGCa -3'
miRNA:   3'- -GUCG---ACA-----------GACGGuGG-------------UCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 154129 0.67 0.723763
Target:  5'- uGGCgcgGauccUCgcagGCCGCCAGCagcuucuugauGGCCUUGCg -3'
miRNA:   3'- gUCGa--C----AGa---CGGUGGUCG-----------UCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 38919 0.67 0.723763
Target:  5'- gCAGCgggCgGCCGCCGGUggguccgcugGGCCgCUGCc -3'
miRNA:   3'- -GUCGacaGaCGGUGGUCG----------UCGG-GACG- -5'
33264 5' -59.3 NC_007605.1 + 74291 0.67 0.713964
Target:  5'- gCAGC-GUCagaaccagGCCG-CAGCGGCUCUGUg -3'
miRNA:   3'- -GUCGaCAGa-------CGGUgGUCGUCGGGACG- -5'
33264 5' -59.3 NC_007605.1 + 151112 0.67 0.713964
Target:  5'- -cGCaGcCUGCCcCuCGGCGGCCCgUGCc -3'
miRNA:   3'- guCGaCaGACGGuG-GUCGUCGGG-ACG- -5'
33264 5' -59.3 NC_007605.1 + 152092 0.67 0.71298
Target:  5'- aAGCcGgCUGCUACCuacuggcGGCAGUCCUGa -3'
miRNA:   3'- gUCGaCaGACGGUGG-------UCGUCGGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.