miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 166161 0.66 0.65007
Target:  5'- cCCGCCGG-GGCua----GGGGGACCc -3'
miRNA:   3'- aGGCGGUCgCCGuccaggUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 70844 0.66 0.65007
Target:  5'- --aGCUAGgGGCAGGUCCcgugguAGGuGAUCu -3'
miRNA:   3'- aggCGGUCgCCGUCCAGG------UCCcCUGG- -5'
33265 5' -63.3 NC_007605.1 + 34963 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 18747 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 21816 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 31894 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 34092 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 61534 0.66 0.640427
Target:  5'- gCgGCCgAGUauGaGCAGGUggCGGGGGACCu -3'
miRNA:   3'- aGgCGG-UCG--C-CGUCCAg-GUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 12609 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 31023 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 13480 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 16549 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 15678 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 159775 0.66 0.640427
Target:  5'- cCCGCCAGCGccuccucGCAGGccccccgcaccagggCCAGGcGACg -3'
miRNA:   3'- aGGCGGUCGC-------CGUCCa--------------GGUCCcCUGg -5'
33265 5' -63.3 NC_007605.1 + 22687 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 25756 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 24885 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 27954 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 50576 0.66 0.640427
Target:  5'- -gCGCUGGCGGCcGGcgcccgUCCucGGGGGCa -3'
miRNA:   3'- agGCGGUCGCCGuCC------AGGu-CCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 28825 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.