miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 3874 1.11 0.000595
Target:  5'- gUCCGCCAGCGGCAGGUCCAGGGGACCu -3'
miRNA:   3'- -AGGCGGUCGCCGUCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 40015 0.79 0.099153
Target:  5'- aUCGgCGG-GGCugGGGUCCAGGGGACCa -3'
miRNA:   3'- aGGCgGUCgCCG--UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 72026 0.77 0.139937
Target:  5'- aCCGCCAGUGGcCGGGgccguggagCCGGGGGcauCCg -3'
miRNA:   3'- aGGCGGUCGCC-GUCCa--------GGUCCCCu--GG- -5'
33265 5' -63.3 NC_007605.1 + 22130 0.75 0.191038
Target:  5'- gUCgGCUGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCGGUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 171333 0.75 0.194209
Target:  5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3'
miRNA:   3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 170796 0.75 0.194209
Target:  5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3'
miRNA:   3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 170273 0.75 0.194209
Target:  5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3'
miRNA:   3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 169736 0.75 0.194209
Target:  5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3'
miRNA:   3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 62857 0.75 0.19882
Target:  5'- gCCGCUgcugucacucucauAGCGGacgccaugaAGGUCCAGGGGuCCg -3'
miRNA:   3'- aGGCGG--------------UCGCCg--------UCCAGGUCCCCuGG- -5'
33265 5' -63.3 NC_007605.1 + 133998 0.75 0.209788
Target:  5'- -gUGCCcggGGCGGCGGGUCgGGaccGGGACCu -3'
miRNA:   3'- agGCGG---UCGCCGUCCAGgUC---CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 2285 0.74 0.230103
Target:  5'- uUCCgGCCagguGGCGGCGGGcuUCCAGaGGGCCc -3'
miRNA:   3'- -AGG-CGG----UCGCCGUCC--AGGUCcCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 31337 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 34406 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 12924 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 19062 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 28268 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 25199 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 15993 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 151303 0.73 0.252055
Target:  5'- gCCGCCgAGgGGCAGGcugcggccgcCCAGGGGGgCa -3'
miRNA:   3'- aGGCGG-UCgCCGUCCa---------GGUCCCCUgG- -5'
33265 5' -63.3 NC_007605.1 + 39929 0.72 0.314444
Target:  5'- cCUGgCGGCGGCGcagcGGUgcCCAGcGGGGCCa -3'
miRNA:   3'- aGGCgGUCGCCGU----CCA--GGUC-CCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.