miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 2285 0.74 0.230103
Target:  5'- uUCCgGCCagguGGCGGCGGGcuUCCAGaGGGCCc -3'
miRNA:   3'- -AGG-CGG----UCGCCGUCC--AGGUCcCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 3874 1.11 0.000595
Target:  5'- gUCCGCCAGCGGCAGGUCCAGGGGACCu -3'
miRNA:   3'- -AGGCGGUCGCCGUCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 12228 0.67 0.544727
Target:  5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3'
miRNA:   3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 12609 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 12924 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 12966 0.67 0.535358
Target:  5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3'
miRNA:   3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 13480 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 15297 0.67 0.544727
Target:  5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3'
miRNA:   3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 15678 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 15993 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 16035 0.67 0.535358
Target:  5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3'
miRNA:   3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 16549 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 18366 0.67 0.544727
Target:  5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3'
miRNA:   3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 18747 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 19062 0.74 0.235435
Target:  5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 19104 0.67 0.535358
Target:  5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3'
miRNA:   3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 19618 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 21435 0.67 0.544727
Target:  5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3'
miRNA:   3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 21816 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 22130 0.75 0.191038
Target:  5'- gUCgGCUGGCuGGCcgagacccGGGUCUGGGGGGCCu -3'
miRNA:   3'- -AGgCGGUCG-CCG--------UCCAGGUCCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.