Results 1 - 20 of 207 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 171610 | 0.66 | 0.608601 |
Target: 5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3' miRNA: 3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 171333 | 0.75 | 0.194209 |
Target: 5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3' miRNA: 3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 171310 | 0.69 | 0.420176 |
Target: 5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3' miRNA: 3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 171161 | 0.67 | 0.573129 |
Target: 5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3' miRNA: 3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 171072 | 0.66 | 0.608601 |
Target: 5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3' miRNA: 3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 170796 | 0.75 | 0.194209 |
Target: 5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3' miRNA: 3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 170772 | 0.69 | 0.420176 |
Target: 5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3' miRNA: 3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 170624 | 0.66 | 0.621131 |
Target: 5'- --gGCgGGCGGCGGGgggUCGGGGu-CCg -3' miRNA: 3'- aggCGgUCGCCGUCCa--GGUCCCcuGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 170550 | 0.66 | 0.608601 |
Target: 5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3' miRNA: 3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 170273 | 0.75 | 0.194209 |
Target: 5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3' miRNA: 3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 170250 | 0.69 | 0.420176 |
Target: 5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3' miRNA: 3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 170101 | 0.67 | 0.573129 |
Target: 5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3' miRNA: 3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 170012 | 0.66 | 0.608601 |
Target: 5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3' miRNA: 3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 169736 | 0.75 | 0.194209 |
Target: 5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3' miRNA: 3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 169712 | 0.69 | 0.420176 |
Target: 5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3' miRNA: 3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 169564 | 0.67 | 0.573129 |
Target: 5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3' miRNA: 3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 169452 | 0.66 | 0.630779 |
Target: 5'- gUCGCU-GCGGCuugcuGGGgcaUGGGGGGCCg -3' miRNA: 3'- aGGCGGuCGCCG-----UCCag-GUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 169237 | 0.66 | 0.601865 |
Target: 5'- gUCGUUGGCGGCAGG--CGGGaGGCCg -3' miRNA: 3'- aGGCGGUCGCCGUCCagGUCCcCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 166643 | 0.66 | 0.630779 |
Target: 5'- aUCCaGCCAGUGGUcuacccGGUCCAuGGuGGCUu -3' miRNA: 3'- -AGG-CGGUCGCCGu-----CCAGGUcCC-CUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 166161 | 0.66 | 0.65007 |
Target: 5'- cCCGCCGG-GGCua----GGGGGACCc -3' miRNA: 3'- aGGCGGUCgCCGuccaggUCCCCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home