miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 159775 0.66 0.640427
Target:  5'- cCCGCCAGCGccuccucGCAGGccccccgcaccagggCCAGGcGACg -3'
miRNA:   3'- aGGCGGUCGC-------CGUCCa--------------GGUCCcCUGg -5'
33265 5' -63.3 NC_007605.1 + 169452 0.66 0.630779
Target:  5'- gUCGCU-GCGGCuugcuGGGgcaUGGGGGGCCg -3'
miRNA:   3'- aGGCGGuCGCCG-----UCCag-GUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 74845 0.66 0.630779
Target:  5'- gUCGUgGGUGGUggAGGcCCAGGuGGCCa -3'
miRNA:   3'- aGGCGgUCGCCG--UCCaGGUCCcCUGG- -5'
33265 5' -63.3 NC_007605.1 + 38251 0.66 0.637533
Target:  5'- aCCGCCAGguccuggGGCAGccgggguuccuggcGcUCCGGGGGcaGCCg -3'
miRNA:   3'- aGGCGGUCg------CCGUC--------------C-AGGUCCCC--UGG- -5'
33265 5' -63.3 NC_007605.1 + 171610 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 170550 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 170012 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 61511 0.66 0.592259
Target:  5'- cUCCGCCcGCaGGUAGG-CCGcccGGGCCa -3'
miRNA:   3'- -AGGCGGuCG-CCGUCCaGGUcc-CCUGG- -5'
33265 5' -63.3 NC_007605.1 + 143124 0.66 0.601865
Target:  5'- cCCGCUc-CGGCGGGgauGGGGGugCg -3'
miRNA:   3'- aGGCGGucGCCGUCCaggUCCCCugG- -5'
33265 5' -63.3 NC_007605.1 + 70215 0.66 0.630779
Target:  5'- uUCCcCCAugagacccacGUGGCAGGcCUAGGGG-CUa -3'
miRNA:   3'- -AGGcGGU----------CGCCGUCCaGGUCCCCuGG- -5'
33265 5' -63.3 NC_007605.1 + 169237 0.66 0.601865
Target:  5'- gUCGUUGGCGGCAGG--CGGGaGGCCg -3'
miRNA:   3'- aGGCGGUCGCCGUCCagGUCCcCUGG- -5'
33265 5' -63.3 NC_007605.1 + 166161 0.66 0.65007
Target:  5'- cCCGCCGG-GGCua----GGGGGACCc -3'
miRNA:   3'- aGGCGGUCgCCGuccaggUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 53689 0.66 0.621131
Target:  5'- gCCG-CAGCGGCuAGGUUCAGccaGGcACCc -3'
miRNA:   3'- aGGCgGUCGCCG-UCCAGGUCc--CC-UGG- -5'
33265 5' -63.3 NC_007605.1 + 70844 0.66 0.65007
Target:  5'- --aGCUAGgGGCAGGUCCcgugguAGGuGAUCu -3'
miRNA:   3'- aggCGGUCgCCGUCCAGG------UCCcCUGG- -5'
33265 5' -63.3 NC_007605.1 + 132582 0.66 0.611491
Target:  5'- cCCGcCCGGCGGCuGGcgaaaaugUCAGGaGGAUg -3'
miRNA:   3'- aGGC-GGUCGCCGuCCa-------GGUCC-CCUGg -5'
33265 5' -63.3 NC_007605.1 + 170624 0.66 0.621131
Target:  5'- --gGCgGGCGGCGGGgggUCGGGGu-CCg -3'
miRNA:   3'- aggCGgUCGCCGUCCa--GGUCCCcuGG- -5'
33265 5' -63.3 NC_007605.1 + 166643 0.66 0.630779
Target:  5'- aUCCaGCCAGUGGUcuacccGGUCCAuGGuGGCUu -3'
miRNA:   3'- -AGG-CGGUCGCCGu-----CCAGGUcCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 125808 0.66 0.601865
Target:  5'- cCCGCCcgcugaagGGCGGaCAGG---GGGGGAUCc -3'
miRNA:   3'- aGGCGG--------UCGCC-GUCCaggUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 61978 0.66 0.621131
Target:  5'- gCCGCUcgugugcaggaGGCGGCGGGgagCCGGGcauCCu -3'
miRNA:   3'- aGGCGG-----------UCGCCGUCCa--GGUCCccuGG- -5'
33265 5' -63.3 NC_007605.1 + 74853 0.66 0.601865
Target:  5'- cUCGCCAGCGGUccgggcacucaaAGGUCuccggcuccuCAGGGaGCUg -3'
miRNA:   3'- aGGCGGUCGCCG------------UCCAG----------GUCCCcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.