miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 170012 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 61461 0.66 0.621131
Target:  5'- gCCGCCuGUGGCAGGcCCcGGccccGGCUc -3'
miRNA:   3'- aGGCGGuCGCCGUCCaGGuCCc---CUGG- -5'
33265 5' -63.3 NC_007605.1 + 170550 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 74845 0.66 0.630779
Target:  5'- gUCGUgGGUGGUggAGGcCCAGGuGGCCa -3'
miRNA:   3'- aGGCGgUCGCCG--UCCaGGUCCcCUGG- -5'
33265 5' -63.3 NC_007605.1 + 53689 0.66 0.621131
Target:  5'- gCCG-CAGCGGCuAGGUUCAGccaGGcACCc -3'
miRNA:   3'- aGGCgGUCGCCG-UCCAGGUCc--CC-UGG- -5'
33265 5' -63.3 NC_007605.1 + 21816 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 125808 0.66 0.601865
Target:  5'- cCCGCCcgcugaagGGCGGaCAGG---GGGGGAUCc -3'
miRNA:   3'- aGGCGG--------UCGCC-GUCCaggUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 61978 0.66 0.621131
Target:  5'- gCCGCUcgugugcaggaGGCGGCGGGgagCCGGGcauCCu -3'
miRNA:   3'- aGGCGG-----------UCGCCGUCCa--GGUCCccuGG- -5'
33265 5' -63.3 NC_007605.1 + 169237 0.66 0.601865
Target:  5'- gUCGUUGGCGGCAGG--CGGGaGGCCg -3'
miRNA:   3'- aGGCGGUCGCCGUCCagGUCCcCUGG- -5'
33265 5' -63.3 NC_007605.1 + 12609 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 61534 0.66 0.640427
Target:  5'- gCgGCCgAGUauGaGCAGGUggCGGGGGACCu -3'
miRNA:   3'- aGgCGG-UCG--C-CGUCCAg-GUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 40296 0.66 0.630779
Target:  5'- aCCcCCAG-GGUGGGgCCAGcGGACCg -3'
miRNA:   3'- aGGcGGUCgCCGUCCaGGUCcCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 70215 0.66 0.630779
Target:  5'- uUCCcCCAugagacccacGUGGCAGGcCUAGGGG-CUa -3'
miRNA:   3'- -AGGcGGU----------CGCCGUCCaGGUCCCCuGG- -5'
33265 5' -63.3 NC_007605.1 + 124489 0.66 0.629814
Target:  5'- gCCGUCucucugagaugguAGCGGCcGuGUCCGGGGaGAgCg -3'
miRNA:   3'- aGGCGG-------------UCGCCGuC-CAGGUCCC-CUgG- -5'
33265 5' -63.3 NC_007605.1 + 70844 0.66 0.65007
Target:  5'- --aGCUAGgGGCAGGUCCcgugguAGGuGAUCu -3'
miRNA:   3'- aggCGGUCgCCGUCCAGG------UCCcCUGG- -5'
33265 5' -63.3 NC_007605.1 + 169452 0.66 0.630779
Target:  5'- gUCGCU-GCGGCuugcuGGGgcaUGGGGGGCCg -3'
miRNA:   3'- aGGCGGuCGCCG-----UCCag-GUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 34963 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 25756 0.66 0.640427
Target:  5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3'
miRNA:   3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 27954 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 31023 0.66 0.640427
Target:  5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3'
miRNA:   3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.