Results 21 - 40 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 72422 | 0.69 | 0.4541 |
Target: 5'- aUCCGCgAuGUGGUagcagaAGGUUuuGGGGGCCg -3' miRNA: 3'- -AGGCGgU-CGCCG------UCCAGguCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 63310 | 0.69 | 0.4541 |
Target: 5'- gCCGCCcgGGUcgaGGCAGGU---GGGGGCCu -3' miRNA: 3'- aGGCGG--UCG---CCGUCCAgguCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 169712 | 0.69 | 0.420176 |
Target: 5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3' miRNA: 3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 162067 | 0.7 | 0.411937 |
Target: 5'- gCCGCgucCAGgucUGGCAGGUCgCAGGuGGGCUc -3' miRNA: 3'- aGGCG---GUC---GCCGUCCAG-GUCC-CCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 99166 | 0.7 | 0.411937 |
Target: 5'- gCCGCCGGCucccGCGccGGU-CAGGGGACg -3' miRNA: 3'- aGGCGGUCGc---CGU--CCAgGUCCCCUGg -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 159256 | 0.7 | 0.395762 |
Target: 5'- cUCGCCGGCGcGCcuGUCCucccaGGGACCc -3' miRNA: 3'- aGGCGGUCGC-CGucCAGGuc---CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 40222 | 0.7 | 0.38783 |
Target: 5'- gUCC-CCA-UGGCacaggccuagGGGUCCAGGGGGCa -3' miRNA: 3'- -AGGcGGUcGCCG----------UCCAGGUCCCCUGg -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 58923 | 0.71 | 0.36467 |
Target: 5'- gUCCaGCUcagGGCGGgAGGU-CAGGGGGCg -3' miRNA: 3'- -AGG-CGG---UCGCCgUCCAgGUCCCCUGg -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 2285 | 0.74 | 0.230103 |
Target: 5'- uUCCgGCCagguGGCGGCGGGcuUCCAGaGGGCCc -3' miRNA: 3'- -AGG-CGG----UCGCCGUCC--AGGUCcCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 133998 | 0.75 | 0.209788 |
Target: 5'- -gUGCCcggGGCGGCGGGUCgGGaccGGGACCu -3' miRNA: 3'- agGCGG---UCGCCGUCCAGgUC---CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 170250 | 0.69 | 0.420176 |
Target: 5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3' miRNA: 3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 170772 | 0.69 | 0.420176 |
Target: 5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3' miRNA: 3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 141714 | 0.69 | 0.445479 |
Target: 5'- -gUGCCGGCuGCagccGGGUCCGGGGuuCCg -3' miRNA: 3'- agGCGGUCGcCG----UCCAGGUCCCcuGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 47733 | 0.69 | 0.44291 |
Target: 5'- gUCCGCCuacugguugucggaGGUGGagAGGcCCGGGGG-CCu -3' miRNA: 3'- -AGGCGG--------------UCGCCg-UCCaGGUCCCCuGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 158814 | 0.69 | 0.436949 |
Target: 5'- gCCcauCCGGgGGCAGGgccuggCCGGGGcuGACCg -3' miRNA: 3'- aGGc--GGUCgCCGUCCa-----GGUCCC--CUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 100648 | 0.69 | 0.428514 |
Target: 5'- cCCGaCCAG-GGUcuuguacuGGG-CCAGGGGAUCg -3' miRNA: 3'- aGGC-GGUCgCCG--------UCCaGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 49882 | 0.69 | 0.427676 |
Target: 5'- uUCCGgggCGGCGGUggaugagaggaggGGGaUCCggAGGGGACCa -3' miRNA: 3'- -AGGCg--GUCGCCG-------------UCC-AGG--UCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 91364 | 0.69 | 0.420176 |
Target: 5'- aUCCGaCCGGUucauGGaCAGGUCCuguGGGGGugggaGCCa -3' miRNA: 3'- -AGGC-GGUCG----CC-GUCCAGG---UCCCC-----UGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 95139 | 0.69 | 0.420176 |
Target: 5'- uUCC-CCAGCGGCcuccAGGUCCAagcagcacugcGGGGucACUg -3' miRNA: 3'- -AGGcGGUCGCCG----UCCAGGU-----------CCCC--UGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 171310 | 0.69 | 0.420176 |
Target: 5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3' miRNA: 3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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