Results 21 - 40 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 22172 | 0.67 | 0.535358 |
Target: 5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3' miRNA: 3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 22687 | 0.66 | 0.640427 |
Target: 5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3' miRNA: 3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 24504 | 0.67 | 0.544727 |
Target: 5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3' miRNA: 3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 24885 | 0.66 | 0.640427 |
Target: 5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3' miRNA: 3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 25199 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 25241 | 0.67 | 0.535358 |
Target: 5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3' miRNA: 3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 25756 | 0.66 | 0.640427 |
Target: 5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3' miRNA: 3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 27573 | 0.67 | 0.544727 |
Target: 5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3' miRNA: 3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 27954 | 0.66 | 0.640427 |
Target: 5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3' miRNA: 3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 28268 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 28310 | 0.67 | 0.535358 |
Target: 5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3' miRNA: 3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 28825 | 0.66 | 0.640427 |
Target: 5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3' miRNA: 3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 30642 | 0.67 | 0.544727 |
Target: 5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3' miRNA: 3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 31023 | 0.66 | 0.640427 |
Target: 5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3' miRNA: 3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 31337 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 31379 | 0.67 | 0.535358 |
Target: 5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3' miRNA: 3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 31894 | 0.66 | 0.640427 |
Target: 5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3' miRNA: 3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 33711 | 0.67 | 0.544727 |
Target: 5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3' miRNA: 3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 34092 | 0.66 | 0.640427 |
Target: 5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3' miRNA: 3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' |
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33265 | 5' | -63.3 | NC_007605.1 | + | 34406 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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